Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01027 ATGGTGGAAGCAATGAAGAATGTTGCAAAGCTTGAGGTTGAATTGACAGTTGAGGAAAGAAACTTACTTTCTGTTGGATACAAGAATGTGGTTGGTGCACGGAGAGCCTCATGGAGGATCTTATCATCAATAGAGCAGAAAGAAGAAGCTAAAGGAAATGAAGCAAATGCTAAACGCATCAAGGAATACAGACAAAAGGTTGAAACAGAGCTCTCTGGTATTTGTGATGATATCATGACAGTGATTGACGAGCACCTAATTCCATTGGCTTCAGCTGGGGAATCGACAGTGTTCTACTATAAGATGAAAGGAGATTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGAAGCAGCTGATCAATCGATGAAGGCATATGAGGCTGCAACCAGCTCAGCCGAATCTGAATTACCCCCTACACATCCTATCCGTTTGGGTTTGGCATTAAATTTCTCAGTCTTCTATTATGAAATCCTGAATTCACCCGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCCATATCCGAACTTGACACCCTTAACGAGGAGTCATACAAAGATAGCACCTTGATCATGCAGCTTCTTAGGGACAACCTTACATTATGGACTTCTGACATCCCAGAGGATGGAGATGATGCCCAAAAGACCAATGGAACAGCCAAGATTTCTGGTGGTGACGATGCCGAGATGAAAAATGGCATTGCCCAAATGGAGGCTTTCTGCTGA 747 42.7 MVEAMKNVAKLEVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNEANAKRIKEYRQKVETELSGICDDIMTVIDEHLIPLASAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKTNGTAKISGGDDAEMKNGIAQMEAFC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8778030 8780291 + CmaCh19G010270.1 Cma19g01027 315715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01027 248 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 1 222 - -
Cma19g01027 248 PRINTS 14-3-3 protein zeta signature 14 43 IPR000308 -
Cma19g01027 248 PRINTS 14-3-3 protein zeta signature 156 182 IPR000308 -
Cma19g01027 248 PRINTS 14-3-3 protein zeta signature 183 212 IPR000308 -
Cma19g01027 248 PRINTS 14-3-3 protein zeta signature 63 87 IPR000308 -
Cma19g01027 248 PRINTS 14-3-3 protein zeta signature 94 116 IPR000308 -
Cma19g01027 248 PRINTS 14-3-3 protein zeta signature 129 155 IPR000308 -
Cma19g01027 248 ProSitePatterns 14-3-3 proteins signature 1. 20 30 IPR023409 -
Cma19g01027 248 Coils Coil 170 190 - -
Cma19g01027 248 Coils Coil 1 21 - -
Cma19g01027 248 PIRSF 14-3-3 1 224 IPR000308 -
Cma19g01027 248 ProSitePatterns 14-3-3 proteins signature 2. 192 211 IPR023409 -
Cma19g01027 248 Pfam 14-3-3 protein 1 210 IPR023410 -
Cma19g01027 248 Gene3D - 1 224 IPR036815 -
Cma19g01027 248 SMART 1433_4 1 223 IPR023410 -
Cma19g01027 248 PANTHER 14-3-3 PROTEIN 1 222 IPR000308 -
Cma19g01027 248 SUPERFAMILY 14-3-3 protein 2 219 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00101 Cma-Chr12:400660 Cma19g01027 Cma-Chr19:8778030 3.03E-134 dispersed
Cma19g01027 Cma-Chr19:8778030 Cma01g00442 Cma-Chr1:2223792 2.46E-116 dispersed
Cma11g01888 Cma-Chr11:12509581 Cma19g01027 Cma-Chr19:8778030 4.65E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01027 K06630 - csv:101208446 439.499