Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01048 ATGTTCCACCTGGGCACGTCAAGGCCGGCACACTACCATGTCCTGCTCGATGAAATAGGTTTTTCTCCTGACGATCTTCAAAATCTTATTCATTCACTATCATATGTGTATCAAAGGAGTACGACTGCACTTTCAATTGCTGCACCAATATGTTATGCGCATCTTGCCGCGTCACAGATGAGCCAGTTTATTAACTTTGAGGAACTGTCTGAAACCTCTTCTGAACGAGGAACCATTACTTCATCGGGGAGTCTTTCAATTCCAGAACCTCCACGTTTCCGAATTAAGCGAGGGAAAAGTGTTCATCGAGAACGGAATCGGAGTTGGAACCGGAACGAATCCAAGTTCTTCCGCCGTCTGAATATTTTTCCTCCCAAGCCGATCTCCATTTTTCCACTACACTGCATCTTCTTTCACACCGTCATGACACTCGACCGCCAGTCCCAACACTCGGACCAAATACGCAGTTCCCTAGACGCCGATGATGACTCTGACCATCTCCATCCAACTCTTTCCACGCCTGCTGTCGTCAATGGAGATGACTGCGAGAATGCCGGAGATGACCTCGTCGTTCCTCCGCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGTTTCCCCGACTCTTCCAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGCCCCGAGCCATATCCTGAGGTCAGCGTGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTCGGAATTGAAGGCTCTAAGGCGGGTTCAGACAAGGTTGATGCATATGTAAACATGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTCTTTGGAGCCTTTTGTGAACATTCCAGACGTTACAATTCGAGAGGCACTTAAAGTTATTCTCGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGCGTGGTGGGATGCTTCAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTCTTCGATGAGTACCAGAGGTTTGCGGCTGCGAAGGCAAGAGTTTCAGATCAGAGGCTGTATCTGGTGTGGAGGATGTTCATTAGTGGAAGAAGGCATTCCGAAGCTGTTTTCACCTTTCAGTGGTCTCTAATTACTTGTCATTCTATTCTTTAG 1179 47.16 MFHLGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVYQRSTTALSIAAPICYAHLAASQMSQFINFEELSETSSERGTITSSGSLSIPEPPRFRIKRGKSVHRERNRSWNRNESKFFRRLNIFPPKPISIFPLHCIFFHTVMTLDRQSQHSDQIRSSLDADDDSDHLHPTLSTPAVVNGDDCENAGDDLVVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEVSVDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNMILECMRNLDMSADQMYSLEPFVNIPDVTIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRLYLVWRMFISGRRHSEAVFTFQWSLITCHSIL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8861806 8870705 - CmaCh19G010480.1 Cma19g01048 315736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01048 392 ProSiteProfiles Piwi domain profile. 1 65 IPR003165 GO:0003676
Cma19g01048 392 Gene3D Protein tyrosine phosphatase superfamily 189 367 IPR029021 -
Cma19g01048 392 PANTHER TYROSINE-PROTEIN PHOSPHATASE 156 362 - -
Cma19g01048 392 MobiDBLite consensus disorder prediction 152 173 - -
Cma19g01048 392 PRINTS Plant and fungal dual specificity phosphatase signature 190 207 IPR020428 GO:0016791
Cma19g01048 392 PRINTS Plant and fungal dual specificity phosphatase signature 293 307 IPR020428 GO:0016791
Cma19g01048 392 PRINTS Plant and fungal dual specificity phosphatase signature 246 260 IPR020428 GO:0016791
Cma19g01048 392 PRINTS Plant and fungal dual specificity phosphatase signature 227 240 IPR020428 GO:0016791
Cma19g01048 392 ProSitePatterns Tyrosine specific protein phosphatases active site. 315 325 IPR016130 GO:0016311|GO:0016791
Cma19g01048 392 ProSiteProfiles Dual specificity protein phosphatase domain profile. 195 377 IPR020422 GO:0006470|GO:0008138
Cma19g01048 392 CDD PFA-DSP_Siw14 189 360 - -
Cma19g01048 392 Pfam Piwi domain 5 64 IPR003165 GO:0003676
Cma19g01048 392 SUPERFAMILY Ribonuclease H-like 3 63 IPR012337 -
Cma19g01048 392 Pfam Tyrosine phosphatase family 190 361 IPR004861 -
Cma19g01048 392 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 190 363 IPR029021 -
Cma19g01048 392 Gene3D - 2 104 IPR036397 GO:0003676
Cma19g01048 392 PANTHER - 156 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g01048 Cma-Chr19:8861806 Cma11g01937 Cma-Chr11:12741941 3.94E-43 dispersed
Cma11g01936 Cma-Chr11:12737190 Cma19g01048 Cma-Chr19:8861806 4.27E-104 wgd
Cma19g01048 Cma-Chr19:8861806 Cma02g00065 Cma-Chr2:304907 1.84E-84 wgd
Cma19g01048 Cma-Chr19:8861806 Cma20g00235 Cma-Chr20:1119634 8.82E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01048 K18045 - csv:101209768 308.916