Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01054 ATGAGGAAGAGGGAGAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCATAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGCCATCGGGTTCCCGCTACATCGGAGAAAACTTCGTTGCAATTTGCCGCGTTTCCTTCAGAGATTTTGCCGGAGTTTCTTTATCTGGGAAGCTACGATAACGCTTCCCGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGCGTTCTTAATCTTCATGGTATAGATTATCTTGTATGGCATCGATTCTGGTCGGATGGAACAGTTCCTACTGTGCCTGATTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACTTTACCTTTTGATGATGCTGTTGAATTCCTAGAGCAATGTGAAAGAGACAAGGCTCGTGTTCTGGTGCACTGCATGTCAGGAAAAAACAGGTCTCCAGCTATTGTAATAGCATTCTTGATGAAATGCAAAGGTTGGAGACTTGCTCAGAGTTATCGGTGGGTTAAAGAGCGGAGGCCATCCGTCGACTTAACTGAATCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCATCCCAAAACACCCTTCCAACCCATCCAGTCTTCTCTCCTGTTGGTCTGCCTTCTTTTGGCTTCAACTTCCCAAAGACCAGCGACCCAGTTCCTACAACACTATTCAACACCATGGCTGCAACTTCGATCTTTACCCACCCAACCGTAGATGTACCATCCCACGAGTTTACGTTTGGCGCTGGGCAGACTCAAAACAGTTTCACCGCTAATCCACGGATCAACCAGCAGCCACATCCAAATGGGTAA 852 46.01 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQFAAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNLHGIDYLVWHRFWSDGTVPTVPDCQNLYKNSFTYHCLQYDKTLPFDDAVEFLEQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYRWVKERRPSVDLTESIYQQLQEYEQKVFGSSQNTLPTHPVFSPVGLPSFGFNFPKTSDPVPTTLFNTMAATSIFTHPTVDVPSHEFTFGAGQTQNSFTANPRINQQPHPNG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8886613 8890063 - CmaCh19G010540.1 Cma19g01054 315742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01054 283 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 201 IPR020422 GO:0006470|GO:0008138
Cma19g01054 283 Pfam Dual specificity phosphatase, catalytic domain 55 198 IPR000340 GO:0008138|GO:0016311
Cma19g01054 283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 202 IPR029021 -
Cma19g01054 283 ProSitePatterns Tyrosine specific protein phosphatases active site. 143 153 IPR016130 GO:0016311|GO:0016791
Cma19g01054 283 Gene3D Protein tyrosine phosphatase superfamily 30 203 IPR029021 -
Cma19g01054 283 CDD DSP_plant_IBR5-like 47 195 - -
Cma19g01054 283 SMART dsp_5 46 198 IPR020422 GO:0006470|GO:0008138
Cma19g01054 283 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 272 - -
Cma19g01054 283 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 190 IPR000387 GO:0016311|GO:0016791
Cma19g01054 283 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 272 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cma19g01054 283 MobiDBLite consensus disorder prediction 263 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00752 Cma-Chr18:6746297 Cma19g01054 Cma-Chr19:8886613 5.24E-08 dispersed
Cma19g01054 Cma-Chr19:8886613 Cma04g00232 Cma-Chr4:1128648 1.95E-09 dispersed
Cma11g01941 Cma-Chr11:12763870 Cma19g01054 Cma-Chr19:8886613 3.76E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01054 K04459 - csv:101211000 464.922