Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01059 ATGGCGGCTAAATCTGTATCTCAAAATCACATAAGAGGCATACTTCTTATGCTCTGTTCTGTTCTTCTGCTGCAGTTTTCTACCTTCGGATTGGCAGCCACTCCCAAGCTTCATCGAGAAGAAGTGAAAGCGTTGAAACAGATCGAGAAGAAGATGGGGAAAAACGACTGGAATTTTAGCCTAGATCCTTGCAGTGGAGAAGGAAATTGGCGCGTTGTTAATGGAAGAAAAGGCTTCGAAAGCTCCGTCACATGTGATTGCTCTTTCAACCACAACTCCTCTTGCCGTATCGTCGCCATAGCTCTGAAGTCCCAGAATCTATCTGGCGTTGTGCCACCAGAATTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACGGGTTCTATTCCGTCACAATGGGCTACCATGCGGTTGGAAGACCTTTCTTTCATGGGAAACAAATTGTCCGGCCCATTCCCGAAAGTTCTTACGAATATCACCACTCTCAGAAATCTGAGCATTGAAGGAAATCAATTTTCCGGCCAAATTCCACCAGGGATCGGAAAACTAGTCAATTTGGAAAAGCTTGTTCTGGCATCAAATGGCTTCACCGGAGAATTGCCAAAAGCACTAGCAAAGTTGTCGAACTTAACTGATATGAGGATTAGTGACAACAATTTTTCTGGAAAGATACCTGAGTTCATTAGTAATTGGACACAGATTGAAAAACTGCATATTCAAGGCTGCTCCCTCGAGGGGCCCATACCCTCAAGTATCTCCACGATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCTCTTTTTCCACCGTTGAGCAAAATGGAATCCATGAGGACGCTGATACTTAGGAAGTGCTTCATTGTCGGAGAAATCCCTAAATACATCGGGGACATGAGAAGATTGAAAAACTTAGACCTCAGCTACAATGACTTGACTGGCGAAGTTCCTGCATCGTTGGAACGACTGGAAAAAATAGATTACATATATTTGACAGGAAACAAGCTCAATGGAATTATTCCTGGTTGGGTCTTAGGAAGCAACAAGAATGTGGATCTTTCTAACAACAACTTCACTTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGGGAGTGTAAATTTAGTAGAGACTTACTCACCGTCTGCAGAAAAATTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTCCCATGTTCTGCATCAAAGGAAGAGCAGCACTACTCCTTGCGCATTAACTGTGGCGGTAAAGAAGCATTTGTAAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCACAATTGGGCTTTTAGCAGCACGGGAAACTTTATGGACAATGATGTTGATGCTGATAACTACATCGAAACAAATACATCCGCTCTTTCAAATGTCTCTGTGACCAATTCAGAACTGTACACAAAAGCGAGGAATTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATAGTGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGACAGTTCATTCAACAGCCTTGGGAGGCGAATATTTGATGTATACATTCAGGAAAAGCTGGTCCTAAAAGATTTTGATATAGAACATGAAGCAGGGGGTACAGGTAAGCCCATTATAAAAGAATTTACCGCAGTTGTCACAAGTCAGACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATCCCACTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCTCCTAAGAACCATGTGAAGAAGCATCACACCATCATAATTATTGGGACAGCAGCAGCAGCTTTTGTTCTCCTTCTGCTGCTATGTATTATGAGGAGGAACGGATGGCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACTATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCAAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAACAGCTGTCGTCGAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCACTGCAACACCCAAATCTTGTCAAGCTTTATGGATGCTGTGTTGATGGGAACCAACTAATGTTGATTTATGAGTACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAAAAATGACCCAAAATCTAAATTGAGATTGGACTGGCCCACTAGGCAGAAAATTTGTCTGGGGATAGCTAGAGGTTTGGCCTATCTGCACGAGGAGTCGAGATTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAACGCTAAAATTTCTGATTTTGGTTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACCAGAATTGCCGGAACCATTGGTTATATGGCACCTGAATACGCCATGCGTGGGTGCTTGACCAGCAAAGCTGATGTTTATAGCTTTGGAGTTGTCGCCTTGGAAATTGTCAGTGGCAAAAGCAATACGAACTACAGGCCTAAAGAGGAATTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAGCCTATTGGAGTTGGTGGACCCAGCCTTAGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAATGCGTCCCCAACTCTACGGCCTCTAATGTCCCAAGTGGTGAGCATGCTCGAAGGTCGAACTCCAGTGCAGGCTCTTCTTTCTGACCCAGGATTTTCAGCTATTAACTCCAAATTGAAGGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCCACACGTAGTTTATCATTGGACGACTTCCCCAGTGATTCCTTGAGTTCGAATGTGGAGCGGGAGGCAGAAGAGAATCGCAATCTTTTTGTAAAACCACAATATTCAAGTAGTTGTGGCAAAATCAACGTAAAGAAAGTCTGTGCTGCTGAATGTGTAAGGCGAAGTTTTACAGCATTCGTTTTGAATCCCGCAGGCCACAGCTTTGCGTGGCTCTTTGTTTCTAGGAAGATTGTAAATTTCTTCTTTCATGGACAAGGACAATAG 3219 42.4 MAAKSVSQNHIRGILLMLCSVLLLQFSTFGLAATPKLHREEVKALKQIEKKMGKNDWNFSLDPCSGEGNWRVVNGRKGFESSVTCDCSFNHNSSCRIVAIALKSQNLSGVVPPEFSKLRFLKQLDLSRNCLTGSIPSQWATMRLEDLSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGQIPPGIGKLVNLEKLVLASNGFTGELPKALAKLSNLTDMRISDNNFSGKIPEFISNWTQIEKLHIQGCSLEGPIPSSISTMTSLTDLRISDLKGGRSLFPPLSKMESMRTLILRKCFIVGEIPKYIGDMRRLKNLDLSYNDLTGEVPASLERLEKIDYIYLTGNKLNGIIPGWVLGSNKNVDLSNNNFTWENSSPAECPRGSVNLVETYSPSAEKLTRIHPCLKRNFPCSASKEEQHYSLRINCGGKEAFVRGERYEADREGASMFYTGHNWAFSSTGNFMDNDVDADNYIETNTSALSNVSVTNSELYTKARNSPQSLTYYGLCLINGNYSVKLHFAEIVFINDSSFNSLGRRIFDVYIQEKLVLKDFDIEHEAGGTGKPIIKEFTAVVTSQTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKNHVKKHHTIIIIGTAAAAFVLLLLLCIMRRNGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFKNDPKSKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRIAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTRSLSLDDFPSDSLSSNVEREAEENRNLFVKPQYSSSCGKINVKKVCAAECVRRSFTAFVLNPAGHSFAWLFVSRKIVNFFFHGQGQ 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8910273 8920403 + CmaCh19G010590.1 Cma19g01059 315747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01059 1072 SUPERFAMILY L domain-like 85 369 - -
Cma19g01059 1072 Gene3D Ribonuclease Inhibitor 165 236 IPR032675 -
Cma19g01059 1072 Gene3D Ribonuclease Inhibitor 40 164 IPR032675 -
Cma19g01059 1072 SUPERFAMILY Protein kinase-like (PK-like) 663 951 IPR011009 -
Cma19g01059 1072 Pfam Protein tyrosine and serine/threonine kinase 681 893 IPR001245 GO:0004672|GO:0006468
Cma19g01059 1072 ProSitePatterns Protein kinases ATP-binding region signature. 684 706 IPR017441 GO:0005524
Cma19g01059 1072 ProSiteProfiles Protein kinase domain profile. 678 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01059 1072 SMART serkin_6 678 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01059 1072 Gene3D - 415 606 - -
Cma19g01059 1072 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Cma19g01059 1072 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 998 - -
Cma19g01059 1072 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Cma19g01059 1072 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Cma19g01059 1072 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 74 998 - -
Cma19g01059 1072 Gene3D Phosphorylase Kinase; domain 1 649 753 - -
Cma19g01059 1072 CDD STKc_IRAK 684 952 - -
Cma19g01059 1072 Pfam Malectin domain 419 602 IPR021720 -
Cma19g01059 1072 Gene3D Ribonuclease Inhibitor 237 385 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01261 Cma-Chr1:9083769 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma04g00663 Cma-Chr4:3376579 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma09g00674 Cma-Chr9:3181465 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma13g00577 Cma-Chr13:5785809 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma18g00286 Cma-Chr18:1517592 Cma19g01059 Cma-Chr19:8910273 8.47E-62 dispersed
Cma18g00439 Cma-Chr18:2418041 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma19g01094 Cma-Chr19:9079003 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma19g01096 Cma-Chr19:9091084 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma19g01059 Cma-Chr19:8910273 Cma09g00673 Cma-Chr9:3170204 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69352 PF07714 PK_Tyr_Ser-Thr 8.30E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01059 - - csv:101219400 1835.85