Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma19g01072 | ATGTGGATTCCTCTAGCCCTGCAATTACTACGACGATTGCTTGCATTTGATCCAAAGGATCGACCTACTGCCGAAGAGGCATTGGCAGATCCTTACTTTAAGGGGCTGGCAAAGGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCTAAGGTGGAGTTTGAATTCGAGAGGAGAAAGGTCACGAAGGACGACATTCGCGAGCTGATATTCCTCGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTTGATCAGTTCAAAAGGCAATTTGCTCATCTTGAAGATAATGGAGGTAAAAGTGGACCAGTTTATCCTCTTGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCAGTACAATCAAATACCATTCCTCCTAAGCCAACATCAAATATTGTTTCCTTTGAAGATCGATATGCACCAGCAGCCTCATACAGCAGCCAGAAGAGGATTGCTGCTACTCAAGCCTGGAAGAATTTCGGGCCCCCGGTCATGCCATACGATAGCGGTGGAAGTATCGTTAAAGATGCTTACGACCCAAGAATGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCCACATACTATTACCAACAATCTTGTGGCCAAAATGAAGGAAGAACAGCATCAGGGGCTGAGCAGGACACTTCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAGTTAGCAGCAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCTTTATGGCACGAGTAGGCATCCCCAAGGCGGGAAACAATGACTGTGCTGCTGCACGTTTGCAGGTAAATGCTCAATATGATGCCGGAGCCATTGCTGGGCACCACCCGTAG | 900 | 45.89 | MWIPLALQLLRRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKRQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKPTSNIVSFEDRYAPAASYSSQKRIAATQAWKNFGPPVMPYDSGGSIVKDAYDPRMLIRSALPSHAIHPTYYYQQSCGQNEGRTASGAEQDTSLQCKQSPQCGMAAKLAADTAATGAFSNPFFMARVGIPKAGNNDCAAARLQVNAQYDAGAIAGHHP | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 8971067 | 8972331 | - | CmaCh19G010720.1 | Cma19g01072 | 315760 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma19g01072 | 299 | Gene3D | Phosphorylase Kinase; domain 1 | 57 | 79 | - | - | |
| Cma19g01072 | 299 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 4 | 190 | - | - | |
| Cma19g01072 | 299 | Gene3D | Transferase(Phosphotransferase) domain 1 | 4 | 56 | - | - | |
| Cma19g01072 | 299 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 19 | 4 | 190 | - | - | |
| Cma19g01072 | 299 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 77 | IPR011009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma19g01072 | Cma-Chr19:8971067 | Cma16g00446 | Cma-Chr16:2221667 | 6.66E-61 | dispersed | |
| Cma11g01956 | Cma-Chr11:12834957 | Cma19g01072 | Cma-Chr19:8971067 | 1.91E-162 | wgd | |
| Cma19g01072 | Cma-Chr19:8971067 | Cma02g00039 | Cma-Chr2:202860 | 6.56E-90 | wgd | |
| Cma19g01072 | Cma-Chr19:8971067 | Cma20g00258 | Cma-Chr20:1252413 | 4.73E-92 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma19g01072 | - | - | csv:101214068 | 485.337 |