Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01073 ATGGTAGCTGGTGGTGCCGGTTGTTCCGGTTTGGTGATTGGGTTTTTGGGATTGCAGGTGGGGAAGTGTATGAGGGATTTGATTTGGGTAATTTTATTATGTTCCGTGGAGGATTCGGGAAGGAGCATACGGAGGGATTGTGGGTTTGTGATCCGGAGCAGGAGTAGATGGGGCAAATATTTCGTGTTCATTGTTGTTCTTGAAGCTGGGTTTCAGAGTTCGGGGAAATGCAGACCGATCACCAATTCTGCAGAATTGGACTTTTTCTCTGAATATGGAGATGCCAACAGATTCAAAATCCAGGAAGTTATTGGAAAGGGGAGGTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACAAATGAAAAAGTGGCAATAAAGAAGATGCATGATATTTTTGAACATGTATCTGATGCTGCTCGGATTCTTCGTGAGATAAAGCTACTCAGACTTCTACGACATCCCGATATTGTCGAAATCAAACACATTATGTTACCACCTTCTCGCAGGGGTTTCAAAGATATTTTTGTTGTGTTCGAGTTGATGGAATCAGATTTAAAAAAAGAGCACTATCAATTTTTTCTTTACCAGCTACTCCGTGCACTGAAATATATTCACACAGCAAATGTTTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAGTTTGTGATTTTGGATTGGCTAGAGTTGCTTTCAGCGACACCCCGACAACAATATTTTGGACGGACTATGTTTCTACCAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGAGATTTGGAGTATTGGCTGCATATTTGCTAAAGTACTGACCGGAAAACCACTTTTTCCTGGTAAAAATATTGTTCACCAACTTGATTTGATGACAGATCTCCTTGGAACGCCTTCGTTAGATACCATTTCTCGGGCAAGTTGCATTATATTATGTATAGTTGGGGAGCAGTCTTGA 1002 41.02 MVAGGAGCSGLVIGFLGLQVGKCMRDLIWVILLCSVEDSGRSIRRDCGFVIRSRSRWGKYFVFIVVLEAGFQSSGKCRPITNSAELDFFSEYGDANRFKIQEVIGKGRYGVVCSAVDTLTNEKVAIKKMHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLKKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVSTRWYRAPELCGSFFSKYTPAIEIWSIGCIFAKVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRASCIILCIVGEQS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8972462 8974611 - CmaCh19G010730.1 Cma19g01073 315761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01073 333 SUPERFAMILY Protein kinase-like (PK-like) 94 322 IPR011009 -
Cma19g01073 333 Pfam Protein kinase domain 99 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01073 333 SMART serkin_6 98 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01073 333 Gene3D Transferase(Phosphotransferase) domain 1 182 320 - -
Cma19g01073 333 Gene3D Phosphorylase Kinase; domain 1 96 181 - -
Cma19g01073 333 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 87 321 - -
Cma19g01073 333 ProSiteProfiles Protein kinase domain profile. 98 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01073 333 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 87 321 - -
Cma19g01073 333 ProSitePatterns Protein kinases ATP-binding region signature. 104 128 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g01073 Cma-Chr19:8972462 Cma20g00258 Cma-Chr20:1252413 4.64E-148 dispersed
Cma19g01073 Cma-Chr19:8972462 Cma11g01956 Cma-Chr11:12834957 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69353 PF00069 Pkinase 4.60E-52 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01073 - - csv:101214068 457.603