Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01082 ATGTCAAATGAAGAAGGCAAGAATCTGTACCAGCCGTACGATCCATTCCATTACAACCAGCTGGATATGAACCGTTCGATCTTCCATCAGCAGCACCCGCCGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGACACCTCGTTGGACTACAACAGCCTGTCGAGGGCTTTCGACGTGTCGTGCTCTTCATCTGAAGTCATTTCTCCGGTGGACGACGTGTCGAAAAACAAGGCTTCTTGTGGAGGCAAGAATTTAAACCAATCTTCAACCACCCAGAATTCCTCTGTGTCGTCTTCGTCTAATGAGGCCGTAGTTGAAGAAGATTCAGTGAAGAGCAACAAAGAGGACCCAAAAGATGAAGAAAGGTCTAAGAAACAGAATATCATATCAAAAAAGAAAGAGAAGCGGCAGAGGGAGCCACGGTTTGCTTTCTTGACAAAGAGTGAGATAGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAAAAAGCAGTAAAAAACAGTCCTTACCCCAGAAGCTACTACAGATGCACGAGTCAAAAGTGTTTAGTGAAGAAGCGAGTGGAAAGATCATATCAAGATCCATCTGTGGTGATTACTACATATGAGGGTCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCTGGAATCATGTCGTCTCCGTTTTATGCATCGGCGTCGACCGCACCCTCCTCCGGTCCTACGCTTCCTCATGAACTCTTTTCGCATTTGTTACCGACCAACTCCCGAGCCGACCCGGCATCGGTGATGTACCAGAATCTAAGCCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 864 45.83 MSNEEGKNLYQPYDPFHYNQLDMNRSIFHQQHPPLDPALMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISPVDDVSKNKASCGGKNLNQSSTTQNSSVSSSSNEAVVEEDSVKSNKEDPKDEERSKKQNIISKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTAPSSGPTLPHELFSHLLPTNSRADPASVMYQNLSLQMPDHYGLLQDLFTQK 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9010129 9011668 + CmaCh19G010820.1 Cma19g01082 315770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01082 287 Gene3D WRKY domain 139 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g01082 287 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 285 IPR044810 GO:0003700
Cma19g01082 287 MobiDBLite consensus disorder prediction 80 138 - -
Cma19g01082 287 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g01082 287 MobiDBLite consensus disorder prediction 109 138 - -
Cma19g01082 287 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g01082 287 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g01082 287 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 16 285 - -
Cma19g01082 287 MobiDBLite consensus disorder prediction 81 108 - -
Cma19g01082 287 SUPERFAMILY WRKY DNA-binding domain 148 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g01082 Cma20g00259 CCT
Cma19g01082 Cma20g00259 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01378 Cma-Chr3:8745541 Cma19g01082 Cma-Chr19:9010129 1.92E-57 dispersed
Cma07g00132 Cma-Chr7:683658 Cma19g01082 Cma-Chr19:9010129 3.39E-50 dispersed
Cma14g01581 Cma-Chr14:11876011 Cma19g01082 Cma-Chr19:9010129 1.75E-46 dispersed
Cma11g01961 Cma-Chr11:12851050 Cma19g01082 Cma-Chr19:9010129 1.37E-136 wgd
Cma19g01082 Cma-Chr19:9010129 Cma20g00259 Cma-Chr20:1265843 3.07E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36943 PF03106 WRKY 2.40E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01082 - - mcha:111016781 433.335