Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01083 ATGTCATCTGGAACTACTTTGAATACAGAATTGTCAAAGAAAACGTCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATCTTATCTGTATGGGTGATGTTTCAAAGAAAAACAAGGAGATCCCCAGAAAACTTCTCTTCTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGATAGAATCGCGACTCAATCTGCCCACGGCAATCATCTTGAGAACCTTTATCATTCTAATCATGATAAATCAAATGAGAAGAACTCAGAGAAGATGATTGGTCATTTGAGCATGAGCAAGTCGAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTACTATCATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCGTATGGAGGATATGGAGGACTTGTGACTGCCTCTCCTCTCGTTGGCTTACCTGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACCCTCAGGGACCTAGAATTTGCGACACATCGTTTCTCTCCAGACAATGTTCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTAAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAGGTGGAGGCCATTGGTCATGTAAGACACAAGAACCTCGTACGACTCCTCGGCTATTGCATTGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGCGCTATGCGGCAACATGGCACCCTTACATGGGATGCCCGGATGAAGGTGCTTCTTGGCACTGCTAAGGCGCTAGCATATTTACATGAGGCAATTGAACCGAAGGTTGTCCACAGAGACATAAAATCTAGCAACATCTTAATTGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAAAGTCACATCACGACTCGAGTGATGGGCACATTTGGGTACGTGGCGCCAGAATATGCCAACACTGGCTTGTTGAATGAGAAGAGTGACATTTATAGCTTTGGCGTTCTCCTTCTGGAAGCAATTACAGGAAGGGACCCTGTTGATTATGGCCGTCCTGCTAATGAGGTTAACCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACGAGGAGAGCTGAGGAAGTTATAGATCCAAGTCTTGAAACTAAACCTTCTACACGCGCATTGAAACGTGCCCTTCTGATTGCGCTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAGGTTGTTAGAATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGGAGCCAAAAGAGCAGCACGGCGAACTCGGAAATAGAGTCGACGAAAGAGATCTCGAGTCCAGCTGAGGTTGGAAGTAAAGCAGTGGATTCACAGAGCAGAGAGGGGAACGCATGA 1539 43.92 MSSGTTLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFQRKTRRSPENFSSSQIPNVSKDIKVDRIATQSAHGNHLENLYHSNHDKSNEKNSEKMIGHLSMSKSSDPDNISQCSSNYYHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATHRFSPDNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWDARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESTKEISSPAEVGSKAVDSQSREGNA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9013783 9016695 - CmaCh19G010830.1 Cma19g01083 315771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01083 512 MobiDBLite consensus disorder prediction 481 512 - -
Cma19g01083 512 CDD STKc_IRAK 198 464 - -
Cma19g01083 512 SUPERFAMILY Protein kinase-like (PK-like) 176 470 IPR011009 -
Cma19g01083 512 PANTHER OS10G0497600 PROTEIN 2 508 - -
Cma19g01083 512 Pfam Protein kinase domain 195 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01083 512 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01083 512 SMART serkin_6 192 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01083 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Cma19g01083 512 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Cma19g01083 512 PANTHER OS01G0323000 PROTEIN 2 508 - -
Cma19g01083 512 MobiDBLite consensus disorder prediction 463 512 - -
Cma19g01083 512 Coils Coil 212 232 - -
Cma19g01083 512 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Cma19g01083 512 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Cma19g01083 512 MobiDBLite consensus disorder prediction 463 480 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00038 Cma19g01083 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02059 Cma-Chr14:14306599 Cma19g01083 Cma-Chr19:9013783 1.90E-171 dispersed
Cma11g01962 Cma-Chr11:12853356 Cma19g01083 Cma-Chr19:9013783 0 wgd
Cma19g01083 Cma-Chr19:9013783 Cma02g00038 Cma-Chr2:195273 0 wgd
Cma19g01083 Cma-Chr19:9013783 Cma20g00260 Cma-Chr20:1270014 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69354 PF00069 Pkinase 8.60E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01083 - - csv:101212378 939.873