Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01089 ATGGGAGCTGCAACGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGCTCAACACTGCGTTTTTGCTCCTTATTTCCCTGCCCATCACCCCCATAAATGCTCCAGTGTTCACGAGGTGTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGGGAGAGCATCAACGGAGCGATGCTGTGAGTTGGATGGTGTATGAGGCTAATGCAAGGATTCGAGATCAGGTTAACGGGTGCGTGGGAACGATAGCGTGTCTGCAGCGGCAAGTGGATGCGTTGCAACAGAAATTGGCCATCACACAAGCCCAGCTACTTCAATTGAAAATGGCCCAATTTTCTTCAGCAAAATCATCATCCGTAGGTAACCTCCTTCTTCCTCCTCTACCCAATATCAATATCAATGTGGGCGCATCCCCATCCTTATGGTCTTGCTAG 441 50.57 MGAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSDAVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSSVGNLLLPPLPNININVGASPSLWSC 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9065665 9066177 + CmaCh19G010890.1 Cma19g01089 315777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01089 146 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cma19g01089 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 120 - -
Cma19g01089 146 Coils Coil 85 112 - -
Cma19g01089 146 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cma19g01089 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 4 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00447 Cma-Chr13:4990036 Cma19g01089 Cma-Chr19:9065665 9.35E-53 dispersed
Cma19g01089 Cma-Chr19:9065665 Cma02g00725 Cma-Chr2:4403586 5.54E-46 dispersed
Cma19g01089 Cma-Chr19:9065665 Cma04g00134 Cma-Chr4:631586 7.15E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36945 PF03195 LOB 7.20E-36 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01089 - - cmax:111468420 290.426