Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01094 ATGTCCATGTTCATGGCGTCTTCATCTTCAGGTTTCATCTTTGCTCTTTGTGCTATTGCTTCCATCGTCTGCCACCTGGCTGTTTTGTCTGAAGCTCAAAATTCAACTCAGCCCACCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTAGACAATGGCGTATATCGGCGCCATCAGGGGCGTGGAATATAAGCGGGAATTTGTGCAGTGGGAGGGCAGTCGACACTACCACCCCCATTGACATTAATGGAAACCTCAATCCTCTCATAAAATGCGATTGCTCAGCCAACAACGGTTCAACTTGCCTCATTACTCAACTGCACGTTTATGCAATAAACGTTGTTGGTGTACTTCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGACTGGAATGCTATCTGCATCTGTTGGTAATCTCACAGGATTGCGAACGTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTGGAACTGTTGGCTTTCGGATCCAACAATTTCTCTGGTTCCTTACCGCCAGAGCTTGGAAATCTTTCTATGTTGAAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCAATCATTTTCACGCCTAAGAAACTTGCATACAGTGTGGGCATCAGACAATGAATTCAGTGGCAGAATACCTGATTTCATCGGGAGTTGGACAGGGCTCACGTCTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCCATACCATCGACATTTTCAAACCTGACATCTTTGACGGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTAGCATTCATCAGTAATATGGCATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACAGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAATTTGAGTTCACTGTCACACTTGTTTCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGCATCACTTCTTAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTCCTTGGATCAACCAGCAAAATTTACAGATAAATTTAGTAGTCAACAATTTCACAATTGAAGGTTCAAGTAGCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGACCGTCCAAGATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCACAAGTTCATCAGGGATTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCTGCTACATACTTTGTTACCCAGTCAAATAGATGGGCCGTTAGTAATACTGGATACTTCACTGGGACCAACAATCCTGAATACATAGGCAAGACATTGTCTCAATTCCCAAACTCCCTTGACACAGAACTTTTTCAGACACAGCGTCTATCTGCTTCATCATTGAGATACTATGGACTGGGACTTGAGAATGGCAACTACACAGTGAACCTTCATTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATCCAGGGAAATCGTGTCTTTCAGAACTTTGATATCAGAAAGGAGGCAGGTGGGTCTCTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAAAGCTTCCTGGAAATTCATCTCTTTTGGGCAGGCAAAGGTACTTGCTGCATACCTAATCAGGGTGCTTTTGGACCCTCCGTTTCAGCCATCAGTGCTACCCCAGATTTTGAACCAACTGTCAGCAACGTACCTCCAAATACTGAGGAGAATAATAGAACGGGCCTAATTGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCTTTGTTCTCCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTTGGGATAGATGCTAGACCGTACACTTTTAGTTTTTCTGAACTAAGGGGTGCTACAAGCGACTTTAATCCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACACTAAGCGATGGAAGAGTGGTTGCTGTCAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTCGCTGAGATTGCTACAATATCCGCAGTGCAACATCGTAATCTTGTAAAATTATATGGATGCTGCATTGAGGCCGACAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGAAATAAACATTTGACTATTGATTGGCCAACACGTTTTGACATATGCGTGGGTGTAGCAAGGGGTCTCACTTACCTCCATGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGACGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTCGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTGTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTCAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGATAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATCCTGAATTATTAGAGTTCAGCAAGGAGGAAGTAAAGAGGGTGATTGGTGTATCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCGTCAATGTCCCGCGTAGTGGCAATGCTGACCGGAGACATCGAAGTGACTCCTGTAACTTCCAAACCAGGTTACCTTACTGATTGGAAATTTGATGACATTACAAGCTTTATAGATAATCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACTAGTTCGAGTGTTGTTGGTGCAAAGCATACGCCAGCCAATGATTTTGAACCAATGCTCCATGAATTATTAGGGGAAGGTAGGTAA 3120 43.17 MSMFMASSSSGFIFALCAIASIVCHLAVLSEAQNSTQPTTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDINGNLNPLIKCDCSANNGSTCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGMLSASVGNLTGLRTLSLGINALSGELPKELGSLSKLELLAFGSNNFSGSLPPELGNLSMLKELYIDSSGVSGGIPQSFSRLRNLHTVWASDNEFSGRIPDFIGSWTGLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISNMASLTILVLRNNNMTGSIPSNIGEFRRLTQLDLSFNNLTGEIPSSLFNLSSLSHLFLGNNKLNGTLPTQKSASLLNIDLSYNDLSGSFPPWINQQNLQINLVVNNFTIEGSSSSGLPSGLNCLQRNFPCNRDRPRYSDFGIKCGGPQITSSSGILFERENETLGPATYFVTQSNRWAVSNTGYFTGTNNPEYIGKTLSQFPNSLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVFQNFDIRKEAGGSLLAVRKNFTAEVTESFLEIHLFWAGKGTCCIPNQGAFGPSVSAISATPDFEPTVSNVPPNTEENNRTGLIVGLVVGLGSVFFLIIGAVFFVLQRRKRRRAYEDEELLGIDARPYTFSFSELRGATSDFNPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGNKHLTIDWPTRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKIYLLEWAWYLHENNCELEMVDPELLEFSKEEVKRVIGVSLLCTQTSPALRPSMSRVVAMLTGDIEVTPVTSKPGYLTDWKFDDITSFIDNPSTEEPDTGRYASTSSSVVGAKHTPANDFEPMLHELLGEGR 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9079003 9089448 - CmaCh19G010940.1 Cma19g01094 315782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01094 1039 Gene3D - 433 620 - -
Cma19g01094 1039 SMART LRR_typ_2 151 175 IPR003591 -
Cma19g01094 1039 SMART LRR_typ_2 319 343 IPR003591 -
Cma19g01094 1039 SMART LRR_typ_2 127 150 IPR003591 -
Cma19g01094 1039 Pfam Protein tyrosine and serine/threonine kinase 703 967 IPR001245 GO:0004672|GO:0006468
Cma19g01094 1039 MobiDBLite consensus disorder prediction 998 1023 - -
Cma19g01094 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Cma19g01094 1039 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 144 1011 - -
Cma19g01094 1039 Gene3D Ribonuclease Inhibitor 285 409 IPR032675 -
Cma19g01094 1039 Pfam Malectin domain 433 616 IPR021720 -
Cma19g01094 1039 ProSiteProfiles Protein kinase domain profile. 700 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01094 1039 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 144 1011 - -
Cma19g01094 1039 SMART serkin_6 700 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01094 1039 Gene3D Ribonuclease Inhibitor 63 284 IPR032675 -
Cma19g01094 1039 MobiDBLite consensus disorder prediction 998 1020 - -
Cma19g01094 1039 Gene3D Transferase(Phosphotransferase) domain 1 776 976 - -
Cma19g01094 1039 CDD STKc_IRAK 706 970 - -
Cma19g01094 1039 SUPERFAMILY L domain-like 103 407 - -
Cma19g01094 1039 SUPERFAMILY Protein kinase-like (PK-like) 684 1002 IPR011009 -
Cma19g01094 1039 Gene3D Phosphorylase Kinase; domain 1 662 775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00526 Cma-Chr4:2664874 Cma19g01094 Cma-Chr19:9079003 5.90E-77 dispersed
Cma06g00882 Cma-Chr6:5538026 Cma19g01094 Cma-Chr19:9079003 1.20E-08 dispersed
Cma11g00343 Cma-Chr11:1704050 Cma19g01094 Cma-Chr19:9079003 6.38E-105 dispersed
Cma19g01094 Cma-Chr19:9079003 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma19g01094 Cma-Chr19:9079003 Cma19g01096 Cma-Chr19:9091084 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69355 PF07714 PK_Tyr_Ser-Thr 8.90E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01094 - - cmax:111468050 2000.33