Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g01094 | ATGTCCATGTTCATGGCGTCTTCATCTTCAGGTTTCATCTTTGCTCTTTGTGCTATTGCTTCCATCGTCTGCCACCTGGCTGTTTTGTCTGAAGCTCAAAATTCAACTCAGCCCACCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTAGACAATGGCGTATATCGGCGCCATCAGGGGCGTGGAATATAAGCGGGAATTTGTGCAGTGGGAGGGCAGTCGACACTACCACCCCCATTGACATTAATGGAAACCTCAATCCTCTCATAAAATGCGATTGCTCAGCCAACAACGGTTCAACTTGCCTCATTACTCAACTGCACGTTTATGCAATAAACGTTGTTGGTGTACTTCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGACTGGAATGCTATCTGCATCTGTTGGTAATCTCACAGGATTGCGAACGTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTGGAACTGTTGGCTTTCGGATCCAACAATTTCTCTGGTTCCTTACCGCCAGAGCTTGGAAATCTTTCTATGTTGAAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCAATCATTTTCACGCCTAAGAAACTTGCATACAGTGTGGGCATCAGACAATGAATTCAGTGGCAGAATACCTGATTTCATCGGGAGTTGGACAGGGCTCACGTCTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCCATACCATCGACATTTTCAAACCTGACATCTTTGACGGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTAGCATTCATCAGTAATATGGCATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACAGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAATTTGAGTTCACTGTCACACTTGTTTCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGCATCACTTCTTAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTCCTTGGATCAACCAGCAAAATTTACAGATAAATTTAGTAGTCAACAATTTCACAATTGAAGGTTCAAGTAGCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGACCGTCCAAGATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCACAAGTTCATCAGGGATTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCTGCTACATACTTTGTTACCCAGTCAAATAGATGGGCCGTTAGTAATACTGGATACTTCACTGGGACCAACAATCCTGAATACATAGGCAAGACATTGTCTCAATTCCCAAACTCCCTTGACACAGAACTTTTTCAGACACAGCGTCTATCTGCTTCATCATTGAGATACTATGGACTGGGACTTGAGAATGGCAACTACACAGTGAACCTTCATTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATCCAGGGAAATCGTGTCTTTCAGAACTTTGATATCAGAAAGGAGGCAGGTGGGTCTCTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAAAGCTTCCTGGAAATTCATCTCTTTTGGGCAGGCAAAGGTACTTGCTGCATACCTAATCAGGGTGCTTTTGGACCCTCCGTTTCAGCCATCAGTGCTACCCCAGATTTTGAACCAACTGTCAGCAACGTACCTCCAAATACTGAGGAGAATAATAGAACGGGCCTAATTGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCTTTGTTCTCCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTTGGGATAGATGCTAGACCGTACACTTTTAGTTTTTCTGAACTAAGGGGTGCTACAAGCGACTTTAATCCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACACTAAGCGATGGAAGAGTGGTTGCTGTCAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTCGCTGAGATTGCTACAATATCCGCAGTGCAACATCGTAATCTTGTAAAATTATATGGATGCTGCATTGAGGCCGACAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGAAATAAACATTTGACTATTGATTGGCCAACACGTTTTGACATATGCGTGGGTGTAGCAAGGGGTCTCACTTACCTCCATGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGACGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTCGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTGTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTCAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGATAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATCCTGAATTATTAGAGTTCAGCAAGGAGGAAGTAAAGAGGGTGATTGGTGTATCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCGTCAATGTCCCGCGTAGTGGCAATGCTGACCGGAGACATCGAAGTGACTCCTGTAACTTCCAAACCAGGTTACCTTACTGATTGGAAATTTGATGACATTACAAGCTTTATAGATAATCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACTAGTTCGAGTGTTGTTGGTGCAAAGCATACGCCAGCCAATGATTTTGAACCAATGCTCCATGAATTATTAGGGGAAGGTAGGTAA | 3120 | 43.17 | MSMFMASSSSGFIFALCAIASIVCHLAVLSEAQNSTQPTTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDINGNLNPLIKCDCSANNGSTCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGMLSASVGNLTGLRTLSLGINALSGELPKELGSLSKLELLAFGSNNFSGSLPPELGNLSMLKELYIDSSGVSGGIPQSFSRLRNLHTVWASDNEFSGRIPDFIGSWTGLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISNMASLTILVLRNNNMTGSIPSNIGEFRRLTQLDLSFNNLTGEIPSSLFNLSSLSHLFLGNNKLNGTLPTQKSASLLNIDLSYNDLSGSFPPWINQQNLQINLVVNNFTIEGSSSSGLPSGLNCLQRNFPCNRDRPRYSDFGIKCGGPQITSSSGILFERENETLGPATYFVTQSNRWAVSNTGYFTGTNNPEYIGKTLSQFPNSLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVFQNFDIRKEAGGSLLAVRKNFTAEVTESFLEIHLFWAGKGTCCIPNQGAFGPSVSAISATPDFEPTVSNVPPNTEENNRTGLIVGLVVGLGSVFFLIIGAVFFVLQRRKRRRAYEDEELLGIDARPYTFSFSELRGATSDFNPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGNKHLTIDWPTRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKIYLLEWAWYLHENNCELEMVDPELLEFSKEEVKRVIGVSLLCTQTSPALRPSMSRVVAMLTGDIEVTPVTSKPGYLTDWKFDDITSFIDNPSTEEPDTGRYASTSSSVVGAKHTPANDFEPMLHELLGEGR | 1039 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 9079003 | 9089448 | - | CmaCh19G010940.1 | Cma19g01094 | 315782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g01094 | 1039 | Gene3D | - | 433 | 620 | - | - | |
Cma19g01094 | 1039 | SMART | LRR_typ_2 | 151 | 175 | IPR003591 | - | |
Cma19g01094 | 1039 | SMART | LRR_typ_2 | 319 | 343 | IPR003591 | - | |
Cma19g01094 | 1039 | SMART | LRR_typ_2 | 127 | 150 | IPR003591 | - | |
Cma19g01094 | 1039 | Pfam | Protein tyrosine and serine/threonine kinase | 703 | 967 | IPR001245 | GO:0004672|GO:0006468 | |
Cma19g01094 | 1039 | MobiDBLite | consensus disorder prediction | 998 | 1023 | - | - | |
Cma19g01094 | 1039 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 820 | 832 | IPR008271 | GO:0004672|GO:0006468 | |
Cma19g01094 | 1039 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 144 | 1011 | - | - | |
Cma19g01094 | 1039 | Gene3D | Ribonuclease Inhibitor | 285 | 409 | IPR032675 | - | |
Cma19g01094 | 1039 | Pfam | Malectin domain | 433 | 616 | IPR021720 | - | |
Cma19g01094 | 1039 | ProSiteProfiles | Protein kinase domain profile. | 700 | 978 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma19g01094 | 1039 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 144 | 1011 | - | - | |
Cma19g01094 | 1039 | SMART | serkin_6 | 700 | 968 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma19g01094 | 1039 | Gene3D | Ribonuclease Inhibitor | 63 | 284 | IPR032675 | - | |
Cma19g01094 | 1039 | MobiDBLite | consensus disorder prediction | 998 | 1020 | - | - | |
Cma19g01094 | 1039 | Gene3D | Transferase(Phosphotransferase) domain 1 | 776 | 976 | - | - | |
Cma19g01094 | 1039 | CDD | STKc_IRAK | 706 | 970 | - | - | |
Cma19g01094 | 1039 | SUPERFAMILY | L domain-like | 103 | 407 | - | - | |
Cma19g01094 | 1039 | SUPERFAMILY | Protein kinase-like (PK-like) | 684 | 1002 | IPR011009 | - | |
Cma19g01094 | 1039 | Gene3D | Phosphorylase Kinase; domain 1 | 662 | 775 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00526 | Cma-Chr4:2664874 | Cma19g01094 | Cma-Chr19:9079003 | 5.90E-77 | dispersed | |
Cma06g00882 | Cma-Chr6:5538026 | Cma19g01094 | Cma-Chr19:9079003 | 1.20E-08 | dispersed | |
Cma11g00343 | Cma-Chr11:1704050 | Cma19g01094 | Cma-Chr19:9079003 | 6.38E-105 | dispersed | |
Cma19g01094 | Cma-Chr19:9079003 | Cma19g01059 | Cma-Chr19:8910273 | 0 | dispersed | |
Cma19g01094 | Cma-Chr19:9079003 | Cma19g01096 | Cma-Chr19:9091084 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69355 | PF07714 | PK_Tyr_Ser-Thr | 8.90E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g01094 | - | - | cmax:111468050 | 2000.33 |