Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01096 ATGTCCATGGCGTCTTCATCTTTAGGTTTTATCTTTGCTCTTTCTGCTATTGCTTCCATCGTCACCCACCTCGTTGTTTTGTCTGAAGCTCAAAATCCAACTCAACCCACCACCGATCCTGATCAAGCAAGAGCTTTGAATTCCATATTTAGTCAATGGAAGATATCGGCGCCATCAGGGGTGTGGAATATAAGCGGGAATCTGTGCAGTGGGAGGGCAGTCAACACTACCACGCCCATTGACAGCTATGGAAACCCCATTCCTCTTATAAAATGCAATTGCTCAGCCAACAATGGTGCAACTTGCCTCATTACTCAACTGAACGTTTATGCAATAAATGTTGTTGGTATACTCCCACCAGAGCTATGGACATTAACGTCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGACAGGAACACTATCTGCATCTGTTGGTAATCTCACAGAATTGCGGAGCTTGAGCCTGGGCACTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTGGAAATGTTGGCTCTCGGGTCCAACAATTTCTCTGGTTCCTTACCACCAGAGCTTGGAAATCTTTCTATGTTGAAGAAACTATACATCGATAGCTCTGGAGTTACTGGTGGTATTCCTCAATCATTTTCACGTCTAAGAAACTTGAATACAGTATGGGCATCGGACAATGACCTCAGTGGCAGAATACCTGATTTCATCGGGAGTTGGACAGGGCTCACAACTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCCATACCGTCGACATTTTCAAACTTGACATCTTTGACCGAGTTGAGAATAGGTGAATTATCCAATGGGAGCTCTTCTCTATCATTCGTCAGTAATATGACATCTCTAACTATCCTGGTGCTGAGAAATAATAATATGACAGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGTCTTACCCTGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAATTTGAGTTCACTGTCACACTTGTTTCTTGGAAATAATAAGTTAACTGGGACCCTACCTACACAAAAGAGTGCATCACTTCTTAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTTCTTGGATCAACCAGCAAAACTTACAGCTAAATTTAGTCGCCAACAATTTCATCATGGAAGGTTCAAGTATCAGTGGGTTGCCTTCGGGATTGCATTGTCTTCAACGAAACTTTCCTTGTAATCGAGACCGTCCAATATATTCTGATTTTGGGATCAAATGTGGCGGTCCTCAGTTCAGAAGTTCATCAGGGATTTTGTTTGAAGCGGAAAAGGAGACTCTCGGTCCTGCTACGTACTTTGTTACCGAGTCAAATAGGTGGGCGGTGAGTAATACTGGATACTTCACTGGGTCCAACAATTCTGAATACATAGCCAATACATTGTCTCAATTCCCAAACACCCTTGTGGGAGAACTTTATCAGACACAGCGACTATCTGCTTCATCATTGAGATACTACGGACTCGGACTTCAGAATGGCAACTACACCGTGAACCTTTATTTTGCAGAAATAGTTCTCTCAGATTCAAATACATGGCAAAGCCGTGAGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTTGTACAGAATTTTAATATTAGAAAGGAAGCAGGTGGGTCTTTCCTTGCTGTCCCAAAGAACTTCACGGCGGAAGTTACAGAAAATTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACATGCTGCATACCAAATCAGGGTGCTTTTGGACCTTCCGTTTCAGCCATCAGTGCTACCCCAGATTTTAAACCAAATGTCAGTAACGTACCTCCAAGTACTAAGGAGAATAGTAGAACGGGCCTAATTGCAAGGGAGGATAATAGAAAGGGCCTAATTGTAGGTCTCTTTGTTGGGTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCTTTATCGTCCAGAGAAGGAATAGGCGTCGTGCCAATGAAGATGAAGAGCTCCTGGGGATAGATGCTAGACCGTACACTTTTAGTTATTCTGAACTAAGGGGTGCTACAAGCGACTTCAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACACTAAGTGATGGAAGAATGGTTGCTGTGAAGCAACTCTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCCACAGTATCTGCAGTGCAGCATCGCAATCTTGTGAAATTATATGGATGTTGCATCGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGAAAAAAACATTTGATTATTGATTGGGCAAAACGTTTTGACATATGCGTGGGTGTAGCAAGGGGCCTCACTTACCTTCATGAGGAATCAAGACTTCGCATAGTGCACAGAGACGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCTAAACTTTACGACGACAAAAAGACTCATATAAGCACTCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTGTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTGAGCGGAAGGCCGAATTCATACCCAAGCTTAGAGCAACACAAAATATATCTTCTTGATTGGACATGGTACCTCCACGAAAACAACCGTGAACTGGAGATGGTGGATCCTGAATTATCAGAGTTCAGCAAGGAGGAAGTAAAGAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCATCCATGTCCCGCGTGGTAGCAATGCTGACTGGAGACGTTGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGATAGACTGGAAATTTGATGACATTACAAGCTTTATTGATACTCCATCAACTGAAGAACCTGATAGTAGCCTTTATGCATCAACAAGTTCGAATGTTGTTGATATAAAGCAATTGCCAGACAAACCACTGCTCCATGAATCATTTGGGGCCGGGTAG 3132 43.14 MSMASSSLGFIFALSAIASIVTHLVVLSEAQNPTQPTTDPDQARALNSIFSQWKISAPSGVWNISGNLCSGRAVNTTTPIDSYGNPIPLIKCNCSANNGATCLITQLNVYAINVVGILPPELWTLTSLTYLKLDQNFLTGTLSASVGNLTELRSLSLGTNALSGELPKELGSLSKLEMLALGSNNFSGSLPPELGNLSMLKKLYIDSSGVTGGIPQSFSRLRNLNTVWASDNDLSGRIPDFIGSWTGLTTLRFQGNSFTGPIPSTFSNLTSLTELRIGELSNGSSSLSFVSNMTSLTILVLRNNNMTGSIPSNIGEFRSLTLLDLSFNNLTGEIPSSLFNLSSLSHLFLGNNKLTGTLPTQKSASLLNIDLSYNDLSGSFPSWINQQNLQLNLVANNFIMEGSSISGLPSGLHCLQRNFPCNRDRPIYSDFGIKCGGPQFRSSSGILFEAEKETLGPATYFVTESNRWAVSNTGYFTGSNNSEYIANTLSQFPNTLVGELYQTQRLSASSLRYYGLGLQNGNYTVNLYFAEIVLSDSNTWQSRERRLFDIYIQGNRVVQNFNIRKEAGGSFLAVPKNFTAEVTENFLEIHLFWAGKGTCCIPNQGAFGPSVSAISATPDFKPNVSNVPPSTKENSRTGLIAREDNRKGLIVGLFVGLGSVFFLIIGAVFFIVQRRNRRRANEDEELLGIDARPYTFSYSELRGATSDFNSSNKLGEGGFGPVYKGTLSDGRMVAVKQLSVASHQGKSQFVAEIATVSAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGKKHLIIDWAKRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSYPSLEQHKIYLLDWTWYLHENNRELEMVDPELSEFSKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDVEVAAVTSKPGYLIDWKFDDITSFIDTPSTEEPDSSLYASTSSNVVDIKQLPDKPLLHESFGAG 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9091084 9102332 - CmaCh19G010960.1 Cma19g01096 315784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01096 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 141 1028 - -
Cma19g01096 1043 CDD STKc_IRAK 714 978 - -
Cma19g01096 1043 Gene3D Transferase(Phosphotransferase) domain 1 784 987 - -
Cma19g01096 1043 Gene3D Ribonuclease Inhibitor 207 283 IPR032675 -
Cma19g01096 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Cma19g01096 1043 Gene3D - 431 618 - -
Cma19g01096 1043 SUPERFAMILY Protein kinase-like (PK-like) 692 1012 IPR011009 -
Cma19g01096 1043 Gene3D Ribonuclease Inhibitor 284 417 IPR032675 -
Cma19g01096 1043 SMART serkin_6 708 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01096 1043 Pfam Malectin domain 431 614 IPR021720 -
Cma19g01096 1043 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 141 1028 - -
Cma19g01096 1043 Gene3D Phosphorylase Kinase; domain 1 670 783 - -
Cma19g01096 1043 ProSiteProfiles Protein kinase domain profile. 708 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01096 1043 Pfam Protein tyrosine and serine/threonine kinase 711 975 IPR001245 GO:0004672|GO:0006468
Cma19g01096 1043 SUPERFAMILY L domain-like 103 410 - -
Cma19g01096 1043 Gene3D Ribonuclease Inhibitor 62 206 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00359 Cma-Chr18:1947657 Cma19g01096 Cma-Chr19:9091084 2.67E-101 dispersed
Cma19g01096 Cma-Chr19:9091084 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma19g01094 Cma-Chr19:9079003 Cma19g01096 Cma-Chr19:9091084 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69356 PF07714 PK_Tyr_Ser-Thr 4.00E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01096 - - cpep:111811393 1973.75