Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01118 ATGGTGGCTACCAAGGCTAAAGTCTGCCTGGATGCGGGTCTACCCACTGAGGATAATCGCACCCGCAGGAGTGCAATGGGAGGTTTTAAGGTTTATACGGAGAAAGATAAGATTAAAGCTGATTCCAGTTGCAAGAAGCCTGTAACAATGAAAAAGGAGCCTTCAACAGATTGTGTGAATCAACCAAAGGGAGACCTGCAGCGCTCAGAGAAGAATACAGAGAAAATTGAAGTTTCTGGGGCCAAAATCACGAGAAGAAGAGCGTTGGCAGATGTGAGTAACGTCCGAGCCAACTCTTCTAGGAAAACAATTCAAGATGGCTCCAAGCATAAGATTTCAACTGGGACTAGAGCTAGCACTGCTGGCGTCAATGTCTCATTTAGGAAACCATTGGGAAAAACGAAGAATACAGGAGAAGCTGTGGGTGAATTGCATGCTTCAGAAAAAGGGCGTGTTAATGATTCAAATGGTTGTTCCGTCTATGAAAGAAACAAAACAGACGGTCCCTGCTGTGCCAATACTGTAAATACCAGGAGAATTAAAAAGATCTCTTTTTCGCAAACAAGGATATCTTTACCAGTGCTAAGGAGGATGAACCAAGCAAATGCTTCGAACCCAAAGGAAGTTACTGAGAAGCCTCAAAAGACCAATAGATCTCAAGCATGTTTGACTAAATCTGGCAAGAATGCAGTAGCCCCGGCAAAAAATATCAGAAGTCGGCTATGGAATAACCGAGTGAGCGATGGCTTCATCATAATGGGTCAAGCCAAGGTGGACACAAATACACTGTCCAAAAAGTCTAGCAAGCCCATTGCAAGGATCATGAAGAAGGCTTATGGTACTCAAGAGGCATCAAAAGCCAAATATGCATCAGTTGCAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAACCCTCAGCATCTCTTTGTGAGGATATAACTAATATGTCCATTCAAGGGAGTGATGCATCTGAACCTACTTGTAATCCAAGTACAAGCACGGATTTGATTGTCAGGAAAAAAGTTGGTCGTAGGAGATCGTATACATCCTTGTTGGTCGCTGGAGCAAAGTTGCTGGATAAATGTGCTGTAGCTACGGAGATGGCTAACCTACCGAGTATTGACAATGACCACAACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATATCGTTATTATTGGGTTACAGAGGCACAAAGCTCATCTCTTTCAAATTACTTATCAGTACAAAAAGAAATTAACCCCCATATGCGAGGCGTTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCACTGTTACTTTGTTTGATCGGTATCTCTCCCAAGTCATAATCAAGAAGAATGAAATGCAGTTGGTTGGTCTTACTGCATTGTTATTGGCATCGAAATATGAAGATTTTTGGCATCCTAGGGTTAAAGATCTAATTAGCATTTCAGCTGAGTCCTACTCAAGGGAGCAAGTGCTACAAATGGAAGCACTCATTCTTAAGAAGTTGAAGTTTCGCTTGAACATGCCTACTCCATATGTTTTTATGTTAAGATTTCTCAAGGCTGCTCAGTCTAATACTCAGCTTGAACACTTATCATTTTACTTGATTGAGCTGGCCTTGGTTGAATACGAAGCTCTTAGTTTCAAGCCGTCGTTGCTATGTGCATCGGCCCTATATGTTGCACGGTGTACGTTGCAAATAAGTCCATGCTGGACCGCACTACTAAACAAACATACACGCTACGAAGCGTCCCAAATAAGAGAATGTGCTGAGAAGATCTTGAAATTTCACCAATCTGCTCATTTGGGACAGCTGAAAGTCACGTATGAGAAGTACATGAAACCTGGTTTTAGCCGTGTTGCGACTCTAAAGCCATTGGACAAGCTTCCTCTTTGA 1932 42.03 MVATKAKVCLDAGLPTEDNRTRRSAMGGFKVYTEKDKIKADSSCKKPVTMKKEPSTDCVNQPKGDLQRSEKNTEKIEVSGAKITRRRALADVSNVRANSSRKTIQDGSKHKISTGTRASTAGVNVSFRKPLGKTKNTGEAVGELHASEKGRVNDSNGCSVYERNKTDGPCCANTVNTRRIKKISFSQTRISLPVLRRMNQANASNPKEVTEKPQKTNRSQACLTKSGKNAVAPAKNIRSRLWNNRVSDGFIIMGQAKVDTNTLSKKSSKPIARIMKKAYGTQEASKAKYASVAIKSISSTASSSKIVEPSASLCEDITNMSIQGSDASEPTCNPSTSTDLIVRKKVGRRRSYTSLLVAGAKLLDKCAVATEMANLPSIDNDHNQMEVAEYVEEIYRYYWVTEAQSSSLSNYLSVQKEINPHMRGVLINWLIEVHFKFDLMPETLFLTVTLFDRYLSQVIIKKNEMQLVGLTALLLASKYEDFWHPRVKDLISISAESYSREQVLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNTQLEHLSFYLIELALVEYEALSFKPSLLCASALYVARCTLQISPCWTALLNKHTRYEASQIRECAEKILKFHQSAHLGQLKVTYEKYMKPGFSRVATLKPLDKLPL 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9188299 9194048 - CmaCh19G011180.1 Cma19g01118 315806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01118 643 SUPERFAMILY Cyclin-like 383 519 IPR036915 -
Cma19g01118 643 Pfam Cyclin, C-terminal domain 521 637 IPR004367 -
Cma19g01118 643 SMART cyclin_7 428 512 IPR013763 -
Cma19g01118 643 SMART cyclin_7 525 607 IPR013763 -
Cma19g01118 643 SMART Cyclin_C_2 521 638 IPR004367 -
Cma19g01118 643 Pfam Cyclin, N-terminal domain 393 519 IPR006671 -
Cma19g01118 643 MobiDBLite consensus disorder prediction 100 119 - -
Cma19g01118 643 PANTHER CYCLIN-B3-1-RELATED 162 640 - -
Cma19g01118 643 MobiDBLite consensus disorder prediction 43 74 - -
Cma19g01118 643 ProSitePatterns Cyclins signature. 423 454 IPR006671 -
Cma19g01118 643 Gene3D - 407 512 - -
Cma19g01118 643 CDD CYCLIN 521 606 IPR013763 -
Cma19g01118 643 PANTHER CYCLINS 162 640 IPR039361 -
Cma19g01118 643 Gene3D - 513 642 - -
Cma19g01118 643 CDD CYCLIN 422 511 IPR013763 -
Cma19g01118 643 SUPERFAMILY Cyclin-like 520 640 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01102 Cma-Chr7:5974638 Cma19g01118 Cma-Chr19:9188299 1.30E-67 dispersed
Cma07g01103 Cma-Chr7:5980240 Cma19g01118 Cma-Chr19:9188299 3.09E-64 dispersed
Cma19g01118 Cma-Chr19:9188299 Cma15g00658 Cma-Chr15:3138809 6.45E-55 dispersed
Cma19g01118 Cma-Chr19:9188299 Cma01g02011 Cma-Chr1:12878049 2.43E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01118 K21777 - csv:101213908 1010.75