Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01121 ATGTTCCATCCTAATAAGAAAGCTTCGACTATGAATTCCCACGAGAGATCAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACTGTCGAGCTTCACGAGCGCTTTGTCGATGCTGTCACCCAGCTCGGCGGCCCTGATAAGGCCACCCCCAAGACCATCATGCGAGTTATGGGTGTCAAGGGTCTCACTCTTTACCACCTAAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATCAAGGATGGTATGAGAGCTTCCGGATTAGAATTTCATCGAAACACTGCTTCTTCATCCAACATCATCAACCGCACCATGAATGAGATGCAAATGGAGGTCCAGAGAAGATTGCATGAACAACTTGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCACAGGGGAAGTATATGCAGAATATATTAGAAAAGGCTTGTCAAACCCTTGCGGGTGAGAACATGGCAGTTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCTAATAATAATAATCAGCAAGGCGGAGGCGGCGGTGGCATTGGCGACATGGCTGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGACCGCCAACACCAACAACGAACTACGGCGGCAGCTCGGGAAAAGGTGCGTTGGACTGGTCGGATGATCTCCGGCTGCAAGATATAGGTATGGCGCCGCCGTCGTCGTGTGTGGTGGAGCAAGAAGATGATTTCAAAGGCATGGATGGGACGCTGGTGGAAAGAGATCAATTGGAGGAAATGTATGATGCAAAGTCAGTGGTGGCAGATGAAGGCATAGGGGGGGATCACAAGAACAACAACAATAATAATAATAATAATAATAATAATAATAATGCGTCCCTAAAGCTTCAGAGGCCATCCCCCCGAAGGGCAGCCCTGGCCGTGGGTAGAGCCAACCACCCTCTTACCACCGCTCCTCTCACCACAAATTCACCCTTCGGGGTTGACTTGCATTATGATGGACGCTGCCGCCCACCGACCTACCAGTAA 1185 51.31 MFHPNKKASTMNSHERSGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLEFHRNTASSSNIINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLAGENMAVSGGYKAMGGIPNNNNQQGGGGGGIGDMAGGIKDFGSPLGFPSFQDLNLYGGDQLDLDGFMPHNDSLLCLGKKKPRPPTPTTNYGGSSGKGALDWSDDLRLQDIGMAPPSSCVVEQEDDFKGMDGTLVERDQLEEMYDAKSVVADEGIGGDHKNNNNNNNNNNNNNNASLKLQRPSPRRAALAVGRANHPLTTAPLTTNSPFGVDLHYDGRCRPPTYQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9211380 9214603 + CmaCh19G011210.1 Cma19g01121 315809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01121 394 MobiDBLite consensus disorder prediction 327 349 - -
Cma19g01121 394 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Cma19g01121 394 MobiDBLite consensus disorder prediction 322 356 - -
Cma19g01121 394 Gene3D - 33 91 - -
Cma19g01121 394 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677
Cma19g01121 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 283 - -
Cma19g01121 394 MobiDBLite consensus disorder prediction 1 19 - -
Cma19g01121 394 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Cma19g01121 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 283 IPR044848 GO:0003700
Cma19g01121 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Cma19g01121 394 MobiDBLite consensus disorder prediction 245 267 - -
Cma19g01121 394 MobiDBLite consensus disorder prediction 1 27 - -
Cma19g01121 394 Pfam MYB-CC type transfactor, LHEQLE motif 129 169 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00669 Cma-Chr2:4062932 Cma19g01121 Cma-Chr19:9211380 4.77E-120 dispersed
Cma14g01894 Cma-Chr14:13402453 Cma19g01121 Cma-Chr19:9211380 8.49E-63 dispersed
Cma10g01192 Cma-Chr10:8839571 Cma19g01121 Cma-Chr19:9211380 0 transposed
Cma19g01121 Cma-Chr19:9211380 Cma20g00290 Cma-Chr20:1412786 1.76E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36947 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01121 - - cpep:111811117 727.628