Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00014 ATGGCGACGAGCTTCGTCCACTCTCACAGACCCGAGTTTCTCACCGTCGCCGTCGCTGCGGTTGCCATCGGCGTTGCTACTACCTACTATTTCTACATCACCAAGAAATCTAAACCCCAAGGCTGCTTGGACCCTGATAAATTCAAAGAATTTAAGCTAGTTAAACGCACACAGCTTAGCCATAATGTAGCTAAGTTCAGATTCTCTCTTCCGACGCCAACCTCTATCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGAAAAGATAGCGAAGGTGAAGAAGTTGTGAAACCGTACACTCCAACCAGTTTGGATACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTTCTTGGCGGTGAAAGGTCCTAAGGGACGTTTCAAGTATGAAGCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCACGAGCAATACTAGAAAACCCAGTTGATCACACCAATGCGCATCTTATATATGCTAATGCTACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGTCTAGGTTCCCTTCCCGCTTTTCTGTCTACTATGTGCTCGATCAGCCTCCTGAAGGATGGGATGGCGGCGTTGGCTTTGTGACTGAGGAAATGATACGACTACACTGTCCTGGACCATCCCCTAATGTTCGGATATTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGGTGCTTACCTCAAAACTATTGGCTATACTTACCAAATGCAGTTCCAGTTCTAA 849 46.64 MATSFVHSHRPEFLTVAVAAVAIGVATTYYFYITKKSKPQGCLDPDKFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSEGEEVVKPYTPTSLDTDVGYFDLVIKMYPQGRMSHHFREMREGDFLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQVARAILENPVDHTNAHLIYANATYEDILLKEELDSLASRFPSRFSVYYVLDQPPEGWDGGVGFVTEEMIRLHCPGPSPNVRILRCGPPPMNKAMGAYLKTIGYTYQMQFQF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 36360 39041 + CmaCh20G000140.1 Cma20g00014 315828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00014 282 CDD cyt_b5_reduct_like 51 282 - -
Cma20g00014 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 IPR001834 GO:0016491
Cma20g00014 282 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cma20g00014 282 Gene3D Translation factors 41 141 - -
Cma20g00014 282 Gene3D - 142 279 IPR039261 -
Cma20g00014 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 275 IPR039261 -
Cma20g00014 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Cma20g00014 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491
Cma20g00014 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491
Cma20g00014 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491
Cma20g00014 282 Pfam Oxidoreductase NAD-binding domain 159 264 IPR001433 GO:0016491
Cma20g00014 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Cma20g00014 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00055 Cma-Chr6:301096 Cma20g00014 Cma-Chr20:36360 3.64E-145 dispersed
Cma12g01219 Cma-Chr12:9499991 Cma20g00014 Cma-Chr20:36360 8.72E-64 dispersed
Cma15g00710 Cma-Chr15:3413739 Cma20g00014 Cma-Chr20:36360 1.12E-44 dispersed
Cma15g00711 Cma-Chr15:3420103 Cma20g00014 Cma-Chr20:36360 6.17E-46 dispersed
Cma20g00014 Cma-Chr20:36360 Cma07g01119 Cma-Chr7:6087617 9.08E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00014 K00326 - csv:101219272 499.59