Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00014 ATGGCGACGAGCTTCGTCCACTCTCACAGACCCGAGTTTCTCACCGTCGCCGTCGCTGCGGTTGCCATCGGCGTTGCTACTACCTACTATTTCTACATCACCAAGAAATCTAAACCCCAAGGCTGCTTGGACCCTGATAAATTCAAAGAATTTAAGCTAGTTAAACGCACACAGCTTAGCCATAATGTAGCTAAGTTCAGATTCTCTCTTCCGACGCCAACCTCTATCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGAAAAGATAGCGAAGGTGAAGAAGTTGTGAAACCGTACACTCCAACCAGTTTGGATACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTTCTTGGCGGTGAAAGGTCCTAAGGGACGTTTCAAGTATGAAGCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCACGAGCAATACTAGAAAACCCAGTTGATCACACCAATGCGCATCTTATATATGCTAATGCTACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGTCTAGGTTCCCTTCCCGCTTTTCTGTCTACTATGTGCTCGATCAGCCTCCTGAAGGATGGGATGGCGGCGTTGGCTTTGTGACTGAGGAAATGATACGACTACACTGTCCTGGACCATCCCCTAATGTTCGGATATTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGGTGCTTACCTCAAAACTATTGGCTATACTTACCAAATGCAGTTCCAGTTCTAA 849 46.64 MATSFVHSHRPEFLTVAVAAVAIGVATTYYFYITKKSKPQGCLDPDKFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSEGEEVVKPYTPTSLDTDVGYFDLVIKMYPQGRMSHHFREMREGDFLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQVARAILENPVDHTNAHLIYANATYEDILLKEELDSLASRFPSRFSVYYVLDQPPEGWDGGVGFVTEEMIRLHCPGPSPNVRILRCGPPPMNKAMGAYLKTIGYTYQMQFQF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 36360 39041 + CmaCh20G000140.1 Cma20g00014 315828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00014 282 CDD cyt_b5_reduct_like 51 282 - -
Cma20g00014 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 IPR001834 GO:0016491
Cma20g00014 282 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cma20g00014 282 Gene3D Translation factors 41 141 - -
Cma20g00014 282 Gene3D - 142 279 IPR039261 -
Cma20g00014 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 275 IPR039261 -
Cma20g00014 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Cma20g00014 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491
Cma20g00014 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491
Cma20g00014 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491
Cma20g00014 282 Pfam Oxidoreductase NAD-binding domain 159 264 IPR001433 GO:0016491
Cma20g00014 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Cma20g00014 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Cma20g00014 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00014 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 499.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00055 Cma-Chr6:301096 Cma20g00014 Cma-Chr20:36360 3.64E-145 dispersed
Cma12g01219 Cma-Chr12:9499991 Cma20g00014 Cma-Chr20:36360 8.72E-64 dispersed
Cma15g00710 Cma-Chr15:3413739 Cma20g00014 Cma-Chr20:36360 1.12E-44 dispersed
Cma15g00711 Cma-Chr15:3420103 Cma20g00014 Cma-Chr20:36360 6.17E-46 dispersed
Cma20g00014 Cma-Chr20:36360 Cma07g01119 Cma-Chr7:6087617 9.08E-152 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00014 Cma_Chr20 FPKM 20.769304 24.235622 13.617423 14.217372 19.568268 24.15799 21.507355 21.403706 18.873581 19.726871