Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00021 | ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGCCCCCTTCGTGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAAAAAATACGGATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTGAAGAAACTCCATCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATCTTATCTGGATCTGCAGATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGATCATGATTTGACAGGTCTTGCTGATCGTCCGGGGATGAGATTTTCAGTTCCCCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATATTTGCAGAGCTTCTGCATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTTAAGCCCACAAGACCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCACTTTGATCGTCATGCTTTAGAACTGTTAGAGAAGATGATTACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTGGATGCGGAGTACTTTTGGACGGATCCATTACCCTGTGACCCCAAGAGTTTGCCAAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGGCAACAGCAACGACAACATGAAGAAAATGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGGCAAGCACATGCACACATGCGACCGGTACCCAACCAACCAATTCACGGGTCTCAACCACCAGTTACTGCAGGACCTAGCCATCATTTTGGAAAGCCTCGTGGACACCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCATTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACAATCAATATGCTCAAGGACGAGGCGCTGCACCCTATGGGTCTGGTAACATGTCAGGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGCAGTAGTTATGGCATGGGAGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGCACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGGAACCAACAATACGGTTGGCAACAGTAA | 1566 | 46.17 | MAVTAPGQLNVNEPPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGILSGSADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMITLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQHARLPPIQQSGQAHAHMRPVPNQPIHGSQPPVTAGPSHHFGKPRGHPGPGRYPGGNPPSGYNHSSRGGQGGYGNNQYAQGRGAAPYGSGNMSGAGPRGGAGGGSSYGMGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ | 521 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 74064 | 80023 | + | CmaCh20G000210.1 | Cma20g00021 | 315835 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00021 | 521 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 339 | IPR011009 | - | |
Cma20g00021 | 521 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Cma20g00021 | 521 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 128 | - | - | |
Cma20g00021 | 521 | CDD | STKc_CDK9_like | 25 | 331 | - | - | |
Cma20g00021 | 521 | MobiDBLite | consensus disorder prediction | 342 | 521 | - | - | |
Cma20g00021 | 521 | MobiDBLite | consensus disorder prediction | 493 | 521 | - | - | |
Cma20g00021 | 521 | MobiDBLite | consensus disorder prediction | 435 | 453 | - | - | |
Cma20g00021 | 521 | MobiDBLite | consensus disorder prediction | 344 | 373 | - | - | |
Cma20g00021 | 521 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672|GO:0006468 | |
Cma20g00021 | 521 | Pfam | Protein kinase domain | 25 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00021 | 521 | ProSiteProfiles | Protein kinase domain profile. | 25 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00021 | 521 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 6 | 456 | - | - | |
Cma20g00021 | 521 | Gene3D | Transferase(Phosphotransferase) domain 1 | 129 | 371 | - | - | |
Cma20g00021 | 521 | PANTHER | CELL DIVISION PROTEIN KINASE | 6 | 456 | - | - | |
Cma20g00021 | 521 | SMART | serkin_6 | 25 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02532 | Cma-Chr4:17343136 | Cma20g00021 | Cma-Chr20:74064 | 0 | dispersed | |
Cma05g00076 | Cma-Chr5:321607 | Cma20g00021 | Cma-Chr20:74064 | 2.71E-91 | dispersed | |
Cma18g00715 | Cma-Chr18:6477536 | Cma20g00021 | Cma-Chr20:74064 | 1.71E-91 | dispersed | |
Cma20g00021 | Cma-Chr20:74064 | Cma04g00549 | Cma-Chr4:2787202 | 1.69E-117 | dispersed | |
Cma20g00021 | Cma-Chr20:74064 | Cma01g00843 | Cma-Chr1:4632630 | 3.39E-122 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69357 | PF00069 | Pkinase | 4.20E-74 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00021 | K08819 | - | csv:101220936 | 961.059 |