Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00021 ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGCCCCCTTCGTGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAAAAAATACGGATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTGAAGAAACTCCATCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATCTTATCTGGATCTGCAGATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGATCATGATTTGACAGGTCTTGCTGATCGTCCGGGGATGAGATTTTCAGTTCCCCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATATTTGCAGAGCTTCTGCATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTTAAGCCCACAAGACCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCACTTTGATCGTCATGCTTTAGAACTGTTAGAGAAGATGATTACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTGGATGCGGAGTACTTTTGGACGGATCCATTACCCTGTGACCCCAAGAGTTTGCCAAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGGCAACAGCAACGACAACATGAAGAAAATGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGGCAAGCACATGCACACATGCGACCGGTACCCAACCAACCAATTCACGGGTCTCAACCACCAGTTACTGCAGGACCTAGCCATCATTTTGGAAAGCCTCGTGGACACCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCATTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACAATCAATATGCTCAAGGACGAGGCGCTGCACCCTATGGGTCTGGTAACATGTCAGGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGCAGTAGTTATGGCATGGGAGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGCACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGGAACCAACAATACGGTTGGCAACAGTAA 1566 46.17 MAVTAPGQLNVNEPPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGILSGSADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMITLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQHARLPPIQQSGQAHAHMRPVPNQPIHGSQPPVTAGPSHHFGKPRGHPGPGRYPGGNPPSGYNHSSRGGQGGYGNNQYAQGRGAAPYGSGNMSGAGPRGGAGGGSSYGMGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 74064 80023 + CmaCh20G000210.1 Cma20g00021 315835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00021 521 SUPERFAMILY Protein kinase-like (PK-like) 19 339 IPR011009 -
Cma20g00021 521 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cma20g00021 521 Gene3D Phosphorylase Kinase; domain 1 14 128 - -
Cma20g00021 521 CDD STKc_CDK9_like 25 331 - -
Cma20g00021 521 MobiDBLite consensus disorder prediction 342 521 - -
Cma20g00021 521 MobiDBLite consensus disorder prediction 493 521 - -
Cma20g00021 521 MobiDBLite consensus disorder prediction 435 453 - -
Cma20g00021 521 MobiDBLite consensus disorder prediction 344 373 - -
Cma20g00021 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cma20g00021 521 Pfam Protein kinase domain 25 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00021 521 ProSiteProfiles Protein kinase domain profile. 25 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00021 521 PANTHER CYCLIN-DEPENDENT KINASE C-2 6 456 - -
Cma20g00021 521 Gene3D Transferase(Phosphotransferase) domain 1 129 371 - -
Cma20g00021 521 PANTHER CELL DIVISION PROTEIN KINASE 6 456 - -
Cma20g00021 521 SMART serkin_6 25 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02532 Cma-Chr4:17343136 Cma20g00021 Cma-Chr20:74064 0 dispersed
Cma05g00076 Cma-Chr5:321607 Cma20g00021 Cma-Chr20:74064 2.71E-91 dispersed
Cma18g00715 Cma-Chr18:6477536 Cma20g00021 Cma-Chr20:74064 1.71E-91 dispersed
Cma20g00021 Cma-Chr20:74064 Cma04g00549 Cma-Chr4:2787202 1.69E-117 dispersed
Cma20g00021 Cma-Chr20:74064 Cma01g00843 Cma-Chr1:4632630 3.39E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69357 PF00069 Pkinase 4.20E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00021 K08819 - csv:101220936 961.059