Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00047 ATGGTTTCCTTCAAAGTTGCTTTTTTTTTGTTTGTGGGGTTGATGGTCGGAGCTTCTAAAGCTCAGCTGTGCCCGACGTTCTATGACGACTCATGCCCCGACGTATCGGACATTGTGCGCGGTGTGGTGCAGCAGGCTTTGGAGACCGACGACCGAGCGGGCGCCAGACTCATTCGCCTTCACTTCCATGACTGCTTCGTGAATGGGTGTGATGGATCAGTTTTACTAGTGAACCAAACGGGAGTAGTGAGTGAGCTTGGCGCTCCTGGAAATGCAAATATTACAGGATTTAACATTGTTGATGACATCAAAGCTGCCCTCGAGGAGGCTTGTCCCGGTGTTGTTTCTTGTGCCGACATCTTAGCCTTAGCTTCCGTACATTCGGTTTCTTTGGTGGGAGGACCCTTTTGGGAGGTTCAACTGGGACGAAGAGACAGGCGAAGGGCCAACTTACAAGGCGCAATTGACGGGCTTCCAACTCCCTTCGAAAATGTTCAAGAACTTAAAGAAAAGTTCGGCAGAGTGGGTCTTGATTCTACTGATCTTGTTGCTCTATCTGGGGCCCACACATTCGGGCGTTCGAGATGTCGGTTCTTCGACAGACGTTTGAACGTTTCGAGCCCAGACAACACACTGGACGCCTCATATGCAACCCAGCTCCGTCAAGCTTGCGCTAGCAGCAGAGACACGTTCTTGAACCTCGACCCCACCACTCCCGACGACTTCGACAACAACTACTACACCAACCTTCAGTCCAACTTCGGCCTTCTCGGCAGCGACCAGGTCCTGTTCTCCACTCCCGGCGAGGACACCGTGGACATCGTCAACATGTTCGCCGGCAGCGAGCAGCAGTTCTTCGACAGCTTCGGGCAGTCCATGATCAACATGGGAAATATCAGCCCTTTAACTGCTTCTGAGCATATACATATGAATATCCAGTTTGTGGTGGTCTTATTAATTGTCATCGAGAATGGATATTCTGCGAATACTTCAATTTCTTGGTCCAAATTAGCGGTTATGAGAGTTTTAAAAACAAATGAGTCTAAATTTCTGAGCTCCACATTCTACGATACCACATGTCCCAATGTATCAAGCATTGTGCGTGGTGTTGTGGAGCAAGCACTGCGAAGTGACGACAGGGCTGGTGCCAAGCTCATCCGTCTCCACTTCCACGACTGCTTCGTTGATGGATGTGATGGGTCGGTGCTATTAGAAGATCAAGATGGCATAGTGAGCGAGCTGGGTGCAAACGGAAATGATGGCATCACAGGTTTCAATATTGTTAATGACATCAAAGCTGCAATCGAGAATGTTTGTCCCGGGGTCGTCTCTTGTGCTGATATACTAGCCCTTGCTTCTCGACACTCCGTCAACTTGGCAGGAGGCCCGGGTTGGGAGACTCAATTAGGAAGAAGAGATGGAAGAACAGCAAATTTGAATGGTGCCATGGAGCTTCCAAGTGCACACACATTTGGGCGTTCGAGATGCCGATTTTTCGACAGACGGCTAAACACTTCAAACCCGGACCCGACCCTGAACTCGACGTACGCGGACCAGCTGCGCGAAAACTGTCAACCAGGGCGAGACACATTCGTGAATCTGGACCCAACCACACCGGACACCTTCGACCGCAACTACTTCACAAATCTTCAGAGCAATCGCGGGCTTCTGGAAAGTGACCAAGTTCTGTTCTCCACCAGCGGAGCTCCAACTATCAGTATTGTCAACAGCTTCGCCAGCAGCCAGAGCCAATTCTTCACCGCCTTCGCTCAGTCAATGATTAACATGGGAAATCTCGGGCCTTTGACTGGGAGCACAGGAGAAATCAGGACCAATTGCAGAAGACTCAACTAA 1854 50.22 MVSFKVAFFLFVGLMVGASKAQLCPTFYDDSCPDVSDIVRGVVQQALETDDRAGARLIRLHFHDCFVNGCDGSVLLVNQTGVVSELGAPGNANITGFNIVDDIKAALEEACPGVVSCADILALASVHSVSLVGGPFWEVQLGRRDRRRANLQGAIDGLPTPFENVQELKEKFGRVGLDSTDLVALSGAHTFGRSRCRFFDRRLNVSSPDNTLDASYATQLRQACASSRDTFLNLDPTTPDDFDNNYYTNLQSNFGLLGSDQVLFSTPGEDTVDIVNMFAGSEQQFFDSFGQSMINMGNISPLTASEHIHMNIQFVVVLLIVIENGYSANTSISWSKLAVMRVLKTNESKFLSSTFYDTTCPNVSSIVRGVVEQALRSDDRAGAKLIRLHFHDCFVDGCDGSVLLEDQDGIVSELGANGNDGITGFNIVNDIKAAIENVCPGVVSCADILALASRHSVNLAGGPGWETQLGRRDGRTANLNGAMELPSAHTFGRSRCRFFDRRLNTSNPDPTLNSTYADQLRENCQPGRDTFVNLDPTTPDTFDRNYFTNLQSNRGLLESDQVLFSTSGAPTISIVNSFASSQSQFFTAFAQSMINMGNLGPLTGSTGEIRTNCRRLN 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 208905 214781 - CmaCh20G000470.1 Cma20g00047 315861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00047 617 Gene3D - 27 306 - -
Cma20g00047 617 SUPERFAMILY Heme-dependent peroxidases 351 617 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PANTHER PEROXIDASE 58 11 306 - -
Cma20g00047 617 Gene3D Peroxidase, domain 2 485 596 - -
Cma20g00047 617 Gene3D Peroxidase, domain 2 159 296 - -
Cma20g00047 617 PANTHER PEROXIDASE 58 485 617 - -
Cma20g00047 617 PANTHER PEROXIDASE 58 342 487 - -
Cma20g00047 617 CDD secretory_peroxidase 351 615 IPR033905 GO:0004601|GO:0042744
Cma20g00047 617 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 CDD secretory_peroxidase 22 306 IPR033905 GO:0004601|GO:0042744
Cma20g00047 617 PANTHER PEROXIDASE 72-RELATED 342 487 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PANTHER PEROXIDASE 72-RELATED 485 617 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PANTHER PEROXIDASE 72-RELATED 11 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 ProSitePatterns Peroxidases active site signature. 382 393 IPR019794 GO:0004601
Cma20g00047 617 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cma20g00047 617 Gene3D - 597 617 - -
Cma20g00047 617 Gene3D - 354 484 - -
Cma20g00047 617 ProSiteProfiles Plant heme peroxidase family profile. 22 617 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 SUPERFAMILY Heme-dependent peroxidases 22 307 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 Pfam Peroxidase 367 486 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 Pfam Peroxidase 39 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 Pfam Peroxidase 487 581 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00047 617 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01215 Cma-Chr2:7176733 Cma20g00047 Cma-Chr20:208905 1.23E-80 dispersed
Cma02g01217 Cma-Chr2:7183736 Cma20g00047 Cma-Chr20:208905 0 dispersed
Cma20g00047 Cma-Chr20:208905 Cma20g00049 Cma-Chr20:220046 5.52E-109 dispersed
Cma20g00047 Cma-Chr20:208905 Cma20g00048 Cma-Chr20:216888 1.83E-112 tandem
Cma02g01214 Cma-Chr2:7173461 Cma20g00047 Cma-Chr20:208905 1.90E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00047 K00430 - peu:105126277 581.252