Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00048 ATGGCCTCCTCCAATGCCATACCCATCTTTTTCTTATTGGCTCTTCTCTTCGGAGCCTCCTCAGCTCAACTCTCCGAAACCTTTTACGACCGAACTTGCCCTCGCCTCCCCAACATTGTCCGCGCCGCCGTCAAGAAAGCAATCGAAACCGACATCCGTGCCGGTGCAAAACTCATCCGCCTCCATTTCCACGATTGCTTCGTCAATGGCTGTGACGGCTCTGTTTTGCTAGAGGATGCTCCCGGCATAGTCAGTGAGCTGAACTCCCCCGGAAATCAGGGAATTCAAGGACTCGAGATTGTCGACGCCATTAAAGCCGCCGTGGAGAGTGAATGCCCCAATACCGTTTCCTGTGCCGACATCCTAGCTCAGGCTTCTAAGGATTCTGTCGATGTGCAAGGAGGGCCTAGTTGGAGAGTGTTATACGGAAGACGAGACAGTAGAATAGCGAACAAAACAGGGGCTGATAGTGGCCTGGCCAGTCCCTTCGAAACTCTCGTCCAACTCAAAAAGAAATTTTCTGATGTTGGCCTCGGAACCACTGATCTCGTGGCTTTATCTGGAGCGCATACGTTTGGTCGATCGAGATGCAGATTCTTCAGCCACCGATTTGCCAATTTCAACAATACCGGAAGGCCAGATCCATCACTGGACGCTAACTACAGAGGATTCCTTCAAGGGGTTTGTTCTGCAGGTCCAGACACGAGAGCAAATTTCGACCCGACAACACCGGACGTGTTCGACAAAAACTACTACACCAACCTTCAAGCGGGGAAGGGGCTTCTGCAGAGCGATCAAGAGCTGTTCTCCACTGCTGGGGCGGACACCATCGCCATTGTGAACAGCTTCGCGGCCAGAGAGGGCACCTTCTTCAAGGAGTTCCGCCAGTCCATGATCAACATGGGCAACATCAAGCCTTTGACTGGCAGCCGTGGGGAAATCAGAAAAAACTGCAGGAGGGTTAACTCCGCCATGGGTGGAGAAGGCCACGATGTTATGTAA 1002 52.4 MASSNAIPIFFLLALLFGASSAQLSETFYDRTCPRLPNIVRAAVKKAIETDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKAAVESECPNTVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSGLASPFETLVQLKKKFSDVGLGTTDLVALSGAHTFGRSRCRFFSHRFANFNNTGRPDPSLDANYRGFLQGVCSAGPDTRANFDPTTPDVFDKNYYTNLQAGKGLLQSDQELFSTAGADTIAIVNSFAAREGTFFKEFRQSMINMGNIKPLTGSRGEIRKNCRRVNSAMGGEGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 216888 218761 - CmaCh20G000480.1 Cma20g00048 315862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00048 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Cma20g00048 333 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 Pfam Peroxidase 40 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 ProSiteProfiles Plant heme peroxidase family profile. 23 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 Gene3D - 28 322 - -
Cma20g00048 333 PANTHER PEROXIDASE 58 12 322 - -
Cma20g00048 333 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 PANTHER PEROXIDASE 72-RELATED 12 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00048 333 Gene3D Peroxidase, domain 2 160 301 - -
Cma20g00048 333 CDD secretory_peroxidase 23 321 IPR033905 GO:0004601|GO:0042744
Cma20g00048 333 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01214 Cma20g00048 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01214 Cma-Chr2:7173461 Cma20g00048 Cma-Chr20:216888 1.47E-133 dispersed
Cma02g01216 Cma-Chr2:7179685 Cma20g00048 Cma-Chr20:216888 0 dispersed
Cma02g01218 Cma-Chr2:7188889 Cma20g00048 Cma-Chr20:216888 1.55E-76 dispersed
Cma20g00048 Cma-Chr20:216888 Cma20g00050 Cma-Chr20:223326 5.34E-140 dispersed
Cma20g00047 Cma-Chr20:208905 Cma20g00048 Cma-Chr20:216888 1.83E-112 tandem
Cma20g00048 Cma-Chr20:216888 Cma20g00049 Cma-Chr20:220046 1.06E-175 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00048 K00430 - csv:101217781 563.533