Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00049 | ATGGGCTTGCTCTTCTTTCTGGCTCTTTTATTTGGAGCCTCTTGTGCCCAACTCACCGAGAACTTCTACGACCAAACTTGTCCTCGTCTCCCTAACATTGTCCGCCAAGAGGTCAAGAGGGCTATTGAAACCGACATCCGTGCCGGGGCTAAGCTTATCCGCTTCCATTTCCATGACTGCTTCGTCCAAGGCTGCGATGGCTCTGTTTTGCTGGAGGATGCTCCCGGCATCGACAGTGAACTCAACGGACAAGGAAATTTAGGAATCCAAGGACTCGAGATTGTCGACGCCATCAAAGCCGCCGTTGAAAGCGAATGTCCCGGCGTCGTATCTTGCGCCGACGTCCTAGCTCTGGCCGCTAAACAATCTGTGGACGTGCAAGGCGGGCCCAGCTGGAGAGTTTTATTCGGAAGAAGAGATAGCAGAACAGCCAATAGAACAGGGGCCGACGAACTCCCAAGTCCGTTCGAAACTCTTGAGCCACTCAAAAAGAAGTTCGAAGCCGTAGGGCTGGATTCCACTGATCTTGTTGCTCTATCTGGGGCGCATACGTTCGGTCGGTCGAGATGCATGTTCTTCAGCGGGCGTTTCTCGAACTTCAATGGAACTGGGCAGCCAGATCCGACACTGGACCCAGCCTACAGGCAGGAGCTGGAGAGAGGTTGTACAGATGGAGAGACGCGAGTGAATTTCGATCCAACCACACCGGACACATTTGACAAAAACTACTACACCAACCTTCAAGCCAATCGAGGGCTTCTAACGAGTGACCAAGTGCTGTTCTCCACTCCTGGCGCCGACACAATTGAAATTGTGAACCGTCTTGGGTCCCGGGAAGGAACCTTCTTTAGACAATTTCGGGTGTCCATGATAAAGATGGGAAACATTAGGCCCTTAACTGGAAACCAAGGGGAAATCAGAAGAAACTGCAGGAGGGTGAATGAGTTGGGAGGTGAAGCAGGGCATGATGTTATGTAA | 978 | 51.74 | MGLLFFLALLFGASCAQLTENFYDQTCPRLPNIVRQEVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIDSELNGQGNLGIQGLEIVDAIKAAVESECPGVVSCADVLALAAKQSVDVQGGPSWRVLFGRRDSRTANRTGADELPSPFETLEPLKKKFEAVGLDSTDLVALSGAHTFGRSRCMFFSGRFSNFNGTGQPDPTLDPAYRQELERGCTDGETRVNFDPTTPDTFDKNYYTNLQANRGLLTSDQVLFSTPGADTIEIVNRLGSREGTFFRQFRVSMIKMGNIRPLTGNQGEIRRNCRRVNELGGEAGHDVM | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 220046 | 222024 | - | CmaCh20G000490.1 | Cma20g00049 | 315863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00049 | 325 | Gene3D | Peroxidase, domain 2 | 153 | 293 | - | - | |
Cma20g00049 | 325 | ProSiteProfiles | Plant heme peroxidase family profile. | 17 | 314 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 175 | 185 | IPR019793 | - | |
Cma20g00049 | 325 | PANTHER | PEROXIDASE 58 | 6 | 314 | - | - | |
Cma20g00049 | 325 | PRINTS | Haem peroxidase superfamily signature | 49 | 63 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Haem peroxidase superfamily signature | 110 | 127 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Haem peroxidase superfamily signature | 128 | 140 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Haem peroxidase superfamily signature | 175 | 190 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Haem peroxidase superfamily signature | 232 | 247 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | Pfam | Peroxidase | 34 | 274 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PANTHER | PEROXIDASE 72-RELATED | 6 | 314 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | SUPERFAMILY | Heme-dependent peroxidases | 17 | 314 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | CDD | secretory_peroxidase | 17 | 313 | IPR033905 | GO:0004601|GO:0042744 | |
Cma20g00049 | 325 | Gene3D | - | 22 | 314 | - | - | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 27 | 46 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 51 | 71 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 90 | 103 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 109 | 119 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 128 | 143 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 174 | 186 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 230 | 245 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 246 | 263 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma20g00049 | 325 | PRINTS | Plant peroxidase signature | 288 | 301 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g01367 | Cma-Chr15:8559098 | Cma20g00049 | Cma-Chr20:220046 | 3.03E-140 | dispersed | |
Cma20g00047 | Cma-Chr20:208905 | Cma20g00049 | Cma-Chr20:220046 | 5.52E-109 | dispersed | |
Cma20g00049 | Cma-Chr20:220046 | Cma16g00634 | Cma-Chr16:3271830 | 4.15E-96 | dispersed | |
Cma20g00048 | Cma-Chr20:216888 | Cma20g00049 | Cma-Chr20:220046 | 1.06E-175 | tandem | |
Cma20g00049 | Cma-Chr20:220046 | Cma20g00050 | Cma-Chr20:223326 | 4.50E-143 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00049 | K00430 | - | csv:101217781 | 488.804 |