Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00049 ATGGGCTTGCTCTTCTTTCTGGCTCTTTTATTTGGAGCCTCTTGTGCCCAACTCACCGAGAACTTCTACGACCAAACTTGTCCTCGTCTCCCTAACATTGTCCGCCAAGAGGTCAAGAGGGCTATTGAAACCGACATCCGTGCCGGGGCTAAGCTTATCCGCTTCCATTTCCATGACTGCTTCGTCCAAGGCTGCGATGGCTCTGTTTTGCTGGAGGATGCTCCCGGCATCGACAGTGAACTCAACGGACAAGGAAATTTAGGAATCCAAGGACTCGAGATTGTCGACGCCATCAAAGCCGCCGTTGAAAGCGAATGTCCCGGCGTCGTATCTTGCGCCGACGTCCTAGCTCTGGCCGCTAAACAATCTGTGGACGTGCAAGGCGGGCCCAGCTGGAGAGTTTTATTCGGAAGAAGAGATAGCAGAACAGCCAATAGAACAGGGGCCGACGAACTCCCAAGTCCGTTCGAAACTCTTGAGCCACTCAAAAAGAAGTTCGAAGCCGTAGGGCTGGATTCCACTGATCTTGTTGCTCTATCTGGGGCGCATACGTTCGGTCGGTCGAGATGCATGTTCTTCAGCGGGCGTTTCTCGAACTTCAATGGAACTGGGCAGCCAGATCCGACACTGGACCCAGCCTACAGGCAGGAGCTGGAGAGAGGTTGTACAGATGGAGAGACGCGAGTGAATTTCGATCCAACCACACCGGACACATTTGACAAAAACTACTACACCAACCTTCAAGCCAATCGAGGGCTTCTAACGAGTGACCAAGTGCTGTTCTCCACTCCTGGCGCCGACACAATTGAAATTGTGAACCGTCTTGGGTCCCGGGAAGGAACCTTCTTTAGACAATTTCGGGTGTCCATGATAAAGATGGGAAACATTAGGCCCTTAACTGGAAACCAAGGGGAAATCAGAAGAAACTGCAGGAGGGTGAATGAGTTGGGAGGTGAAGCAGGGCATGATGTTATGTAA 978 51.74 MGLLFFLALLFGASCAQLTENFYDQTCPRLPNIVRQEVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIDSELNGQGNLGIQGLEIVDAIKAAVESECPGVVSCADVLALAAKQSVDVQGGPSWRVLFGRRDSRTANRTGADELPSPFETLEPLKKKFEAVGLDSTDLVALSGAHTFGRSRCMFFSGRFSNFNGTGQPDPTLDPAYRQELERGCTDGETRVNFDPTTPDTFDKNYYTNLQANRGLLTSDQVLFSTPGADTIEIVNRLGSREGTFFRQFRVSMIKMGNIRPLTGNQGEIRRNCRRVNELGGEAGHDVM 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 220046 222024 - CmaCh20G000490.1 Cma20g00049 315863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00049 325 Gene3D Peroxidase, domain 2 153 293 - -
Cma20g00049 325 ProSiteProfiles Plant heme peroxidase family profile. 17 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 175 185 IPR019793 -
Cma20g00049 325 PANTHER PEROXIDASE 58 6 314 - -
Cma20g00049 325 PRINTS Haem peroxidase superfamily signature 49 63 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Haem peroxidase superfamily signature 110 127 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Haem peroxidase superfamily signature 128 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Haem peroxidase superfamily signature 175 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 Pfam Peroxidase 34 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PANTHER PEROXIDASE 72-RELATED 6 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 SUPERFAMILY Heme-dependent peroxidases 17 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 CDD secretory_peroxidase 17 313 IPR033905 GO:0004601|GO:0042744
Cma20g00049 325 Gene3D - 22 314 - -
Cma20g00049 325 PRINTS Plant peroxidase signature 27 46 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 51 71 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 90 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 109 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 128 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 174 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00049 325 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01367 Cma-Chr15:8559098 Cma20g00049 Cma-Chr20:220046 3.03E-140 dispersed
Cma20g00047 Cma-Chr20:208905 Cma20g00049 Cma-Chr20:220046 5.52E-109 dispersed
Cma20g00049 Cma-Chr20:220046 Cma16g00634 Cma-Chr16:3271830 4.15E-96 dispersed
Cma20g00048 Cma-Chr20:216888 Cma20g00049 Cma-Chr20:220046 1.06E-175 tandem
Cma20g00049 Cma-Chr20:220046 Cma20g00050 Cma-Chr20:223326 4.50E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00049 K00430 - csv:101217781 488.804