Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00050 ATGGGTGTGTATAAAAGCCAACATCCCATCGCACAACTTCTTCACAAACCCAAAACCCACTTCTTCTCAGACATGGCTCCCCCTAAACTCGCACCCTTCCTTGTTGTGGCGGCTTTGATGCTACGAGCTTCTCACGCCCACCTTAGCCCTTTCTTCCACGCCAAAACATGCCCTCAGCTGCCTTTCGTTGTTGCCAACGTGGTTGCCCAAGCTCTACAAACTGACGACCGAGCAGCTGCCAAGCTCATTCGCCTCCACTTTCATGATTGCTTCGTCAATGGGTGTGATGGGTCTGTGCTATTGGAGGACGTGCCGGGCGTCATCGATAGCGAATTAAACGGACCACCAAACGGTGGGATCCAAGGGCTGGACATCGTGGACAACATTAAATCAGCGGTTGAAAGCGCTTGCCCAGGCGTTGTTTCCTGCGCCGACATCTTAGCCATTTCCTCACAAATCTCTGTTTTCTTGTCGGGAGGGCCAATTTGGGTAGTTCCACTGGGAAGAAAAGACAGCAGGATAGCCAATAGAACCGGAACCTCAAACCTTCCTGGTCCCTCCGAAACTCTGGTCGGGCTTAAAAGCAAGTTTGCGGCACAAGGGCTTGATTCTACGGATCTTGTGGCTCTATCAGGAGCACACACGTTCGGGCGAGCGAGATGTTTTTTCTTCACCGGCCGCTTCGACAACTTCAACAACACCGGAAGACCCGACCCAACGCTAAACCCGGTTTACAGGGAGCAGCTTCGACGGCTCTGTACGACCCAACAAGCACGAGTGAATTTTGACCCCATAACGCCAACCAAATTCGACAAAGCCTACTATACCAATCTCATAAACCTGAAGGGGCTTCTCCAAAGTGACCAAGAGCTGTTCTCCACCCCCAGGGCTGATACCACGGCCATCGTAAAAGATTTCGCCGCTAACGAGGTTGCCTTCTTTACCCAATTTGTGAAATCCATGATCAAAATGGGGAATCTGAAGCCGCCCCCCGGCATCAGATCAGAAATCAGACAAAACTGTAGGAGGGTCAACCCGGTGAAGGCCTATGACATTATGTAA 1062 51.41 MGVYKSQHPIAQLLHKPKTHFFSDMAPPKLAPFLVVAALMLRASHAHLSPFFHAKTCPQLPFVVANVVAQALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLEDVPGVIDSELNGPPNGGIQGLDIVDNIKSAVESACPGVVSCADILAISSQISVFLSGGPIWVVPLGRKDSRIANRTGTSNLPGPSETLVGLKSKFAAQGLDSTDLVALSGAHTFGRARCFFFTGRFDNFNNTGRPDPTLNPVYREQLRRLCTTQQARVNFDPITPTKFDKAYYTNLINLKGLLQSDQELFSTPRADTTAIVKDFAANEVAFFTQFVKSMIKMGNLKPPPGIRSEIRQNCRRVNPVKAYDIM 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 223326 224910 - CmaCh20G000500.1 Cma20g00050 315864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00050 353 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Haem peroxidase superfamily signature 159 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Haem peroxidase superfamily signature 263 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PANTHER PEROXIDASE 58 39 345 - -
Cma20g00050 353 Pfam Peroxidase 65 309 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 SUPERFAMILY Heme-dependent peroxidases 48 346 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Cma20g00050 353 PRINTS Plant peroxidase signature 319 332 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 261 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 277 294 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 159 174 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 Gene3D - 52 345 - -
Cma20g00050 353 Gene3D Peroxidase, domain 2 184 324 - -
Cma20g00050 353 ProSiteProfiles Plant heme peroxidase family profile. 47 345 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 CDD secretory_peroxidase 47 344 IPR033905 GO:0004601|GO:0042744
Cma20g00050 353 PANTHER PEROXIDASE 72-RELATED 39 345 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00050 353 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00048 Cma-Chr20:216888 Cma20g00050 Cma-Chr20:223326 5.34E-140 dispersed
Cma20g00050 Cma-Chr20:223326 Cma04g00767 Cma-Chr4:3896086 8.26E-95 dispersed
Cma20g00049 Cma-Chr20:220046 Cma20g00050 Cma-Chr20:223326 4.50E-143 tandem
Cma20g00050 Cma-Chr20:223326 Cma20g00051 Cma-Chr20:226087 1.58E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00050 K00430 - csv:101211989 571.622