Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00071 ATGGATTTGGATCACCCATCCGCGCCAGACCTCGATCTTCACAGTCTCACGGCCCTCAGGGTACTCGGAAAAGGAGCCATGGGGACCGTCTTCCTCGTCCACCACTGCCTTGCCGATGACCCTGCTCATTTCCCCTTCGCTCTCAAGGTCGTCGACAAATNCTCTTTTGTCTCCAAGCTCGACGCTGAGGGCCGAGCCCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCCTTCCCTAAACCCCACCCCTTCCTCCCCCACATAATCGGTTCCTTCGAGTCCGACGAATTTTTGGGCTGGGCCCTTCCCTACTGTCCTGGCGGCGACCTTAACGTCTTGCGTCACCGTCAAATGGACCGGGTTTTCTCGCCCGCCGTCATCAGGTTCTATTTGGCCGAGATAGTCTGTGCGCTCGACCACCTCCATAGCCTGGGCATCGTCTACCGAGATTTGAAGCCGGAGAATGTATTGATTCAACAATCGGGTCACGTCACTCTCACGGACTTTGATTTGTCGCGTAGTTTGACTCGCAGAACAGTAAATGACGTCGTCTCGCTTGATAGCTCCGGCCAGGAGAAGCCGACAGTGGTCGTCCGGCAAAAACACCGGCGGAAATTGACGCGATGGTTCATGGCGAACTCCAATGCTAGAGAGGGGTCAAGGAAGGCTAAATTGGCTCGGGTTAGCCCTGTGAGCCGCCGGAAGCCGAGTTTCTCCAACGGCGAGCGGTCGAACTCGTTTGTCGGAACAGAGGAGTATATTTCGCCGGAGGTCGTTCGAGGCGAGGGACATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTACGGGACGACGCCGTTTAAGGGGAAGAACCGGAAAGAGACGTTTGGAAACGTTCTGTTGAAAGCTCCGGAGTTGATCGGAAAGCGTTCGGATTTAACGGATTTAATCGAACGGTTGCTAGTGAAGGACCCCACCAGGCGGTTAGGGTATGTACGCGGCGCATGTGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCATGCGTCCACCATTTTTACCCCCTGACGAAGAAACGGAGTTGACGAAGAATCCAGCGCTCGGTGGTGTGGGTATAACGGAATACTTCCATAGACAGAGATCCCCAGCTTCGTTTCCACCATCGCCGTCGTCAACTCCGTCGACCTCCTTCAATTGGGAGAATAACAACAACAAGTGTTTGACGGAGTTCTGA 1257 54.26 MDLDHPSAPDLDLHSLTALRVLGKGAMGTVFLVHHCLADDPAHFPFALKVVDKXSFVSKLDAEGRARWEIQVLSRLSFPKPHPFLPHIIGSFESDEFLGWALPYCPGGDLNVLRHRQMDRVFSPAVIRFYLAEIVCALDHLHSLGIVYRDLKPENVLIQQSGHVTLTDFDLSRSLTRRTVNDVVSLDSSGQEKPTVVVRQKHRRKLTRWFMANSNAREGSRKAKLARVSPVSRRKPSFSNGERSNSFVGTEEYISPEVVRGEGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFGNVLLKAPELIGKRSDLTDLIERLLVKDPTRRLGYVRGACEIKEHAFFNGVKWDLLTEVMRPPFLPPDEETELTKNPALGGVGITEYFHRQRSPASFPPSPSSTPSTSFNWENNNNKCLTEF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 311465 312721 - CmaCh20G000710.1 Cma20g00071 315885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00071 418 ProSiteProfiles Protein kinase domain profile. 16 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00071 418 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00071 418 Pfam Protein kinase domain 18 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00071 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Cma20g00071 418 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Cma20g00071 418 Gene3D Phosphorylase Kinase; domain 1 17 104 - -
Cma20g00071 418 PANTHER FLIPPASE KINASE 1-RELATED 11 390 - -
Cma20g00071 418 SMART serkin_6 16 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00071 418 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Cma20g00071 418 Gene3D Transferase(Phosphotransferase) domain 1 105 178 - -
Cma20g00071 418 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 11 390 - -
Cma20g00071 418 MobiDBLite consensus disorder prediction 388 411 - -
Cma20g00071 418 SUPERFAMILY Protein kinase-like (PK-like) 17 406 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01235 Cma20g00071 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00071 Cma-Chr20:311465 Cma02g00853 Cma-Chr2:4972923 1.09E-74 dispersed
Cma08g00240 Cma-Chr8:1334804 Cma20g00071 Cma-Chr20:311465 4.60E-97 transposed
Cma02g01235 Cma-Chr2:7272237 Cma20g00071 Cma-Chr20:311465 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69361 PF00069 Pkinase 7.70E-30 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00071 - K08286 csv:101207338 676.781