Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00072 ATGGGATCCATGAACTCCAACAATTGGCTTTCCTTTCCACTTTCACCCACTAATCCCTCTTTGCCTCCACATCTTCAAACGCCAACTCATGCCCATCACTTCTCTTTGGGAAATTTGGAGAATGACAATATGGATATCCCATTTCAAACCCACGAGTGGAATCTGATAAGTGGTCAAGGTGGAGGGGAAGTTCCAAAAGTAGCAGACTTCTTAGGCGTAAGCAAGGCAGAAAATGAGGCAGATCTCATTGGGTTTAATCAAATTCATGAAGCGAATGATACGGATTACTTGTTTCCAATCACAAGATTGGTTCCTCTTCAACAACACCCAACACCCGCGGCTGCTCCTATCAATATGGACTCTACTACTAACTATGACCCTCAAGATAACTCCAACAGCTTGCAGTCTTTGACACTTTCAATGGGCAGTGGGAAGCCCTCTACTTGTGAAACCAGCTCCACCCCTGACAGTGCAAACAATAATACCACTCTCGATGTCACTCCTAGAAGAACTTTGGACACTTTTGGGCAAAGGACTTCAATTTATCGCGGAGTGACCAGGCATAGATGGACGGGAAGGTATGAAGCACATTTATGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGCCAAGGTGGGTATGATAAAGAAGATAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTATTGGGGAACATCCACCACCACCAACTTTCCTATTAGTAACTACGAGAAGGAAGTTGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTTCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGCGCGTCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGGAGATGGCAGGCTAGGATTGGCAGAGTGGCAGGAAACAAAGATCTTTATTTGGGAACCTTCAGCACGGAAGAGGAGGCAGCAGAGGCATACGACATAGCGGCCATAAAATTCAGAGGGCTTAATGCAGTCACCAACTTTGACATGAGCCGTTACGACGTGAAAAGCATACTAGAGAGCAACACGCTCCCAATAGGCGGCGGTGCTGCCAAACGTCTGAAAGAGGCACAAGCCATCGAGTCGTCTCGAAAGCGGGACGAAATGATTGCGCTTGGTTCCTCCTCTTCTTTCCAATATGGAAGCTCATCATCGTCTAGTAATTCCTCCAATCACAGGCTACAACAACAACAACCCTCTTACCCTCTACTCCAACAGCCTAATTTGAATATGGACCACCATCACCATCACCACCACCACCTTCAAACCCAGCCTTTCCTCTCTCTTCAAAACCACCACGACATTTCTCAATACACCAACGATCCCTCCTCCTTTCACCACTCTTCTACTTACATGCACACCCAACTCCAGCTTCACCACCACCAATCTGATAATTCCCCTTATCCTAACAACAACAACAACAACAACCATCAATTCTACGGCGGCGCCGGTGGTGGGTATCTTCATAACCATCCGGGTTTGCTCCATGGGATGATTAACATGGGCGGCGGCGGAGGGTCTAACTTGGAGAGTAGTAACAACAACAATAATGCCTTGTCCAGTGCAAATCATTATGAGAATCCTAATAATAATAGTAATGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACATCGGCCACCGCGAACAACGGCGCCCCAGCGGAAGAATACGCACTGGTTAAGGTTGACTATGATATGCCGCCTAATGCTGGTGGGTATGGTAGCTGGTCGGGGGATTCGGTGCAGGGTTCTAACCCTGGGGTTTTCTCCATGTGGAACGATTGA 1818 47.3 MGSMNSNNWLSFPLSPTNPSLPPHLQTPTHAHHFSLGNLENDNMDIPFQTHEWNLISGQGGGEVPKVADFLGVSKAENEADLIGFNQIHEANDTDYLFPITRLVPLQQHPTPAAAPINMDSTTNYDPQDNSNSLQSLTLSMGSGKPSTCETSSTPDSANNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSSSSNSSNHRLQQQQPSYPLLQQPNLNMDHHHHHHHHLQTQPFLSLQNHHDISQYTNDPSSFHHSSTYMHTQLQLHHHQSDNSPYPNNNNNNNHQFYGGAGGGYLHNHPGLLHGMINMGGGGGSNLESSNNNNNALSSANHYENPNNNSNGGYLGNAFGMGSTSATANNGAPAEEYALVKVDYDMPPNAGGYGSWSGDSVQGSNPGVFSMWND 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 315450 318280 - CmaCh20G000720.1 Cma20g00072 315886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00072 605 ProSiteProfiles AP2/ERF domain profile. 181 244 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 604 - -
Cma20g00072 605 Gene3D AP2/ERF domain 280 340 IPR036955 GO:0003700|GO:0006355
Cma20g00072 605 Gene3D AP2/ERF domain 181 246 IPR036955 GO:0003700|GO:0006355
Cma20g00072 605 MobiDBLite consensus disorder prediction 517 540 - -
Cma20g00072 605 MobiDBLite consensus disorder prediction 385 416 - -
Cma20g00072 605 MobiDBLite consensus disorder prediction 114 166 - -
Cma20g00072 605 Pfam AP2 domain 181 236 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 Pfam AP2 domain 281 330 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 PRINTS Ethylene responsive element binding protein signature 182 193 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 PRINTS Ethylene responsive element binding protein signature 320 340 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 SUPERFAMILY DNA-binding domain 180 246 IPR016177 GO:0003677
Cma20g00072 605 SMART rav1_2 280 344 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 SMART rav1_2 181 250 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 CDD AP2 180 246 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 SUPERFAMILY DNA-binding domain 279 340 IPR016177 GO:0003677
Cma20g00072 605 MobiDBLite consensus disorder prediction 385 434 - -
Cma20g00072 605 CDD AP2 279 340 IPR001471 GO:0003700|GO:0006355
Cma20g00072 605 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 604 - -
Cma20g00072 605 MobiDBLite consensus disorder prediction 464 488 - -
Cma20g00072 605 MobiDBLite consensus disorder prediction 113 166 - -
Cma20g00072 605 ProSiteProfiles AP2/ERF domain profile. 280 338 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00792 Cma-Chr5:5023853 Cma20g00072 Cma-Chr20:315450 2.12E-132 dispersed
Cma12g00994 Cma-Chr12:7929517 Cma20g00072 Cma-Chr20:315450 3.75E-129 dispersed
Cma16g00743 Cma-Chr16:3982680 Cma20g00072 Cma-Chr20:315450 5.95E-121 dispersed
Cma20g00072 Cma-Chr20:315450 Cma03g00890 Cma-Chr3:6544296 3.26E-110 dispersed
Cma02g01236 Cma-Chr2:7276258 Cma20g00072 Cma-Chr20:315450 1.39E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36954 PF00847 AP2 1.80E-08 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00072 K09285 - csv:101207097 862.833