Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00075 ATGACTGATCCCTACTCCATGCTTCACCCCTACTTTTCTTCTTCTAAATCTTACTCTCCTTATCATGATCTCTTCTCTCTTTCTTACTCTAATGATAACAATACCCTAAAAAACACATCCTCCTCCTCCTCCTCCTCTTTCACAACAACCCATGAATCATTTTCTCCTGATTCTTGTTCCTCCCCTCAAGTCCTTCCCCTTTTAAGCTTGAGCCCTGCAAGGCATGATCAAGAACATCACTCCTGTAGGCCTTGTGAAGACGAGGAGGAGGAGGAGGAGGAGAGCGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTTCTGATCTGATTTTGAGGCTCTCTTCAACTGAGATCTCAGACAAGGAAGACCAACAAGAAGCCGTCCCTGTTGTCGTTCCTAATTACTACTCCTCCTCATCCTCATCTACTGCTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCTGCTCAGATTCTCATTGGTCCAACTCACTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCGATGCTTAGGCTGCCATGCTACTGCTGTGCGCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCCAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAAAGAAAGCATGGAATCAAGCCATTTACATGTAGAAAATGTGGGAAGGCCTTTGCTGTGAGAGGGGACTGGAGAACCCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAGGCCTTTGGACATGGCCATGCAGCTTATGGGATTGACTCGTTTGACGAAGATGATGAGGCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTAAGGAATGGAGATTGA 1005 45.67 MTDPYSMLHPYFSSSKSYSPYHDLFSLSYSNDNNTLKNTSSSSSSSFTTTHESFSPDSCSSPQVLPLLSLSPARHDQEHHSCRPCEDEEEEEEESVTVALHLGLPTPPSSDLILRLSSTEISDKEDQQEAVPVVVPNYYSSSSSSTAGLNKGQYWIPTPAQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEAASEIEHDNDLSLRNGD 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 330635 332922 - CmaCh20G000750.1 Cma20g00075 315889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00075 334 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Cma20g00075 334 Gene3D Classic Zinc Finger 227 307 - -
Cma20g00075 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
Cma20g00075 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Cma20g00075 334 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 12 327 - -
Cma20g00075 334 PANTHER ZINC FINGER PROTEIN WIP2 12 327 IPR043584 GO:0003700|GO:0010468
Cma20g00075 334 MobiDBLite consensus disorder prediction 32 61 - -
Cma20g00075 334 SMART c2h2final6 169 191 IPR013087 -
Cma20g00075 334 SMART c2h2final6 253 273 IPR013087 -
Cma20g00075 334 SMART c2h2final6 279 302 IPR013087 -
Cma20g00075 334 SUPERFAMILY beta-beta-alpha zinc fingers 234 273 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01240 Cma20g00075 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00292 Cma-Chr13:2709643 Cma20g00075 Cma-Chr20:330635 7.50E-102 dispersed
Cma14g00440 Cma-Chr14:2082202 Cma20g00075 Cma-Chr20:330635 1.06E-126 dispersed
Cma17g00951 Cma-Chr17:7075795 Cma20g00075 Cma-Chr20:330635 8.56E-114 wgd
Cma02g01240 Cma-Chr2:7287914 Cma20g00075 Cma-Chr20:330635 0 wgd
Cma20g00075 Cma-Chr20:330635 Cma08g00533 Cma-Chr8:3088730 6.07E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36955 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00075 - - bhj:120089206 468.388