Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00075 | ATGACTGATCCCTACTCCATGCTTCACCCCTACTTTTCTTCTTCTAAATCTTACTCTCCTTATCATGATCTCTTCTCTCTTTCTTACTCTAATGATAACAATACCCTAAAAAACACATCCTCCTCCTCCTCCTCCTCTTTCACAACAACCCATGAATCATTTTCTCCTGATTCTTGTTCCTCCCCTCAAGTCCTTCCCCTTTTAAGCTTGAGCCCTGCAAGGCATGATCAAGAACATCACTCCTGTAGGCCTTGTGAAGACGAGGAGGAGGAGGAGGAGGAGAGCGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTTCTGATCTGATTTTGAGGCTCTCTTCAACTGAGATCTCAGACAAGGAAGACCAACAAGAAGCCGTCCCTGTTGTCGTTCCTAATTACTACTCCTCCTCATCCTCATCTACTGCTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCTGCTCAGATTCTCATTGGTCCAACTCACTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCGATGCTTAGGCTGCCATGCTACTGCTGTGCGCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCCAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAAAGAAAGCATGGAATCAAGCCATTTACATGTAGAAAATGTGGGAAGGCCTTTGCTGTGAGAGGGGACTGGAGAACCCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAGGCCTTTGGACATGGCCATGCAGCTTATGGGATTGACTCGTTTGACGAAGATGATGAGGCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTAAGGAATGGAGATTGA | 1005 | 45.67 | MTDPYSMLHPYFSSSKSYSPYHDLFSLSYSNDNNTLKNTSSSSSSSFTTTHESFSPDSCSSPQVLPLLSLSPARHDQEHHSCRPCEDEEEEEEESVTVALHLGLPTPPSSDLILRLSSTEISDKEDQQEAVPVVVPNYYSSSSSSTAGLNKGQYWIPTPAQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEAASEIEHDNDLSLRNGD | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 330635 | 332922 | - | CmaCh20G000750.1 | Cma20g00075 | 315889 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00075 | 334 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 171 | 191 | IPR013087 | - | |
Cma20g00075 | 334 | Gene3D | Classic Zinc Finger | 227 | 307 | - | - | |
Cma20g00075 | 334 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 253 | 280 | IPR013087 | - | |
Cma20g00075 | 334 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 169 | 196 | IPR013087 | - | |
Cma20g00075 | 334 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 12 | 327 | - | - | |
Cma20g00075 | 334 | PANTHER | ZINC FINGER PROTEIN WIP2 | 12 | 327 | IPR043584 | GO:0003700|GO:0010468 | |
Cma20g00075 | 334 | MobiDBLite | consensus disorder prediction | 32 | 61 | - | - | |
Cma20g00075 | 334 | SMART | c2h2final6 | 169 | 191 | IPR013087 | - | |
Cma20g00075 | 334 | SMART | c2h2final6 | 253 | 273 | IPR013087 | - | |
Cma20g00075 | 334 | SMART | c2h2final6 | 279 | 302 | IPR013087 | - | |
Cma20g00075 | 334 | SUPERFAMILY | beta-beta-alpha zinc fingers | 234 | 273 | IPR036236 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01240 | Cma20g00075 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g00292 | Cma-Chr13:2709643 | Cma20g00075 | Cma-Chr20:330635 | 7.50E-102 | dispersed | |
Cma14g00440 | Cma-Chr14:2082202 | Cma20g00075 | Cma-Chr20:330635 | 1.06E-126 | dispersed | |
Cma17g00951 | Cma-Chr17:7075795 | Cma20g00075 | Cma-Chr20:330635 | 8.56E-114 | wgd | |
Cma02g01240 | Cma-Chr2:7287914 | Cma20g00075 | Cma-Chr20:330635 | 0 | wgd | |
Cma20g00075 | Cma-Chr20:330635 | Cma08g00533 | Cma-Chr8:3088730 | 6.07E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36955 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00075 | - | - | bhj:120089206 | 468.388 |