Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00089 ATGCAGTCAAAGCCTAGAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGATACAATCATATATCCTCGCCAGCAGCAGGAGGAAATTTGTCCAATTCAACATCACTGGAATGTCCTAATGGTGCCTCAGAATCTAATGACGGACCGTCAATGTCAAATGATGATTTGAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCTGTAAGTTATGGGCAAGTACAGAACAACTGTCAGCATGCTGTTTCTGCTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCTATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCGCATGCTAGAATGGCTTTACCTCTTGAGGTGACACAGGAACCTGTTTTTGTGAATGCCAAACAATATCAAGGGATCCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAATTAGAAAGCCCTATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAGTTAATTCTTCGAGTTCTACTGTGAAGAACAAGGACTCCGGTTCTGGTCAAGCTTTCTCGTCGCACTCTGCTGGTTCATCGGGTTCTGAAGCTGCGCCTTGTGCCTTGGCGGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCGAGGACGCAGTTGCATGAGGCGTATGAAGCTCGAAGTTATGTGAATGGCAGTGGACAATTTCATAATTACAGTAGCTTCCAAGCTTCCTCGTATGCTTTACGGTCTGGTGAGAGAGGTGATGATGGAGACTGTTCGGGACAGCAACGAGGAAGCATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1032 45.83 MQSKPRSVNQLESEPPNMQQTSSYSEPWWRSIGYNHISSPAAGGNLSNSTSLECPNGASESNDGPSMSNDDLNEDDDDDTTKDSHAVSYGQVQNNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNLYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTVKNKDSGSGQAFSSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYEARSYVNGSGQFHNYSSFQASSYALRSGERGDDGDCSGQQRGSISENQAAQRRLAIK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 381712 387216 + CmaCh20G000890.1 Cma20g00089 315903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00089 343 MobiDBLite consensus disorder prediction 205 221 - -
Cma20g00089 343 MobiDBLite consensus disorder prediction 39 84 - -
Cma20g00089 343 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 334 IPR001289 GO:0003700|GO:0006355
Cma20g00089 343 MobiDBLite consensus disorder prediction 226 257 - -
Cma20g00089 343 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Cma20g00089 343 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Cma20g00089 343 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Cma20g00089 343 MobiDBLite consensus disorder prediction 1 24 - -
Cma20g00089 343 Gene3D - 167 229 - -
Cma20g00089 343 MobiDBLite consensus disorder prediction 39 68 - -
Cma20g00089 343 MobiDBLite consensus disorder prediction 205 259 - -
Cma20g00089 343 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Cma20g00089 343 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 334 - -
Cma20g00089 343 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Cma20g00089 343 MobiDBLite consensus disorder prediction 312 343 - -
Cma20g00089 343 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00928 Cma20g00089 CCT
Cma10g00928 Cma20g00089 ECH
Cma11g00848 Cma20g00089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00928 Cma-Chr10:4642922 Cma20g00089 Cma-Chr20:381712 2.23E-94 wgd
Cma11g00848 Cma-Chr11:4281494 Cma20g00089 Cma-Chr20:381712 9.35E-96 wgd
Cma17g00955 Cma-Chr17:7113927 Cma20g00089 Cma-Chr20:381712 3.90E-51 wgd
Cma02g01253 Cma-Chr2:7361987 Cma20g00089 Cma-Chr20:381712 0 wgd
Cma20g00089 Cma-Chr20:381712 Cma08g00526 Cma-Chr8:3030325 1.79E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36957 PF02045 CBFB_NFYA 4.50E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00089 K08064 - csv:101212961 600.512