Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00108 AATCAGCGAGCAGCGGAAGCGGAAGCAGACGCAGACGCAGAAGCAGAAGCAGAAGCGGCACTGCAGAAGCAGCAGCATTCATCCGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCACTCCTGCTGTCGCGCCAATTGCCGGACCCCCTGCTCCTATGTGGTCCGCCGCCGCTGCCGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTACGTTGTTGCTCCAGCTGCTTCTTTCAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGTGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACGAAGAAACCGAGGCTTATAGCCTCTCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCAGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCGGTCGTGAAGATCGGGGGTCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGATGCCGGAGATGGCTTTCCTAATGTATCGGAACTGCATTTGAGCGACGGCGGCGGTGGAAGCAGAAATAATCGGAATGGTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGTGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAATTATGGTAATCAAATCCGCTGA 1356 55.31 NQRAAEAEADADAEAEAEAALQKQQHSSVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNATPAVAPIAGPPAPMWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNGSSAPFVDPSDVYNVAASGNGGAPGFLGGSNYGNQIR 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 500296 503249 + CmaCh20G001080.1 Cma20g00108 315922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00108 451 MobiDBLite consensus disorder prediction 287 336 - -
Cma20g00108 451 MobiDBLite consensus disorder prediction 21 35 - -
Cma20g00108 451 MobiDBLite consensus disorder prediction 401 420 - -
Cma20g00108 451 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 100 450 IPR007818 GO:0003700|GO:0006355
Cma20g00108 451 MobiDBLite consensus disorder prediction 405 420 - -
Cma20g00108 451 MobiDBLite consensus disorder prediction 1 59 - -
Cma20g00108 451 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 100 450 - -
Cma20g00108 451 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 341 388 IPR006511 -
Cma20g00108 451 MobiDBLite consensus disorder prediction 288 332 - -
Cma20g00108 451 Pfam Domain of unknown function (DUF702) 234 389 - -
Cma20g00108 451 Coils Coil 4 24 - -
Cma20g00108 451 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 236 278 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01273 Cma20g00108 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01327 Cma-Chr4:6768933 Cma20g00108 Cma-Chr20:500296 1.58E-64 dispersed
Cma18g00858 Cma-Chr18:7489921 Cma20g00108 Cma-Chr20:500296 5.89E-58 dispersed
Cma19g00283 Cma-Chr19:2141068 Cma20g00108 Cma-Chr20:500296 1.35E-38 dispersed
Cma11g00884 Cma-Chr11:4482907 Cma20g00108 Cma-Chr20:500296 2.46E-72 wgd
Cma02g01273 Cma-Chr2:7475680 Cma20g00108 Cma-Chr20:500296 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36960 PF05142 DUF702 1.70E-60 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00108 - - cpep:111777082 736.102