Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00110 ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGAGGAAATGTGGAAGAAGTTAGAAATGCAAAGAACAGGGCATGGGAGTCATGGCTCATGTGCAATTTGCTTAAATAAAATATCTCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACTTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTGGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTAAGAGCTTCGTGGTATGAGCCACTGATTGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGATTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGTTACGTAAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTACGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA 720 46.81 MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGSCAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 514216 516591 + CmaCh20G001100.1 Cma20g00110 315924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00110 239 MobiDBLite consensus disorder prediction 184 239 - -
Cma20g00110 239 MobiDBLite consensus disorder prediction 199 230 - -
Cma20g00110 239 SUPERFAMILY RING/U-box 44 95 - -
Cma20g00110 239 SMART ring_2 45 87 IPR001841 -
Cma20g00110 239 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 238 - -
Cma20g00110 239 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Cma20g00110 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 106 IPR013083 -
Cma20g00110 239 Pfam Ring finger domain 44 88 IPR001841 -
Cma20g00110 239 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Cma20g00110 239 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01275 Cma20g00110 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01275 Cma-Chr2:7483171 Cma20g00110 Cma-Chr20:514216 1.01E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00110 - - mcha:111020607 364.77