Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00126 ATGGTGGAGTTTAGAGTAATTAGAGGGGAAATGGAAGGAGCCAAAATATGTCTCGGTGGTTCTAGTTCGCTTCCAATTCACGAATCCCTAGAAGAATTAATGGAACAGAGGAAGTACAGAGCCGATCTTCTTTCACCTGCCTTCCTTGTCCTCCTCCTTTTCCTCTCCCTTTCCGGTCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTATAAAAAATGGACGGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACTGACAACAATCACTCGGTTGTGCTTACGTACAACTTCACCACATACAAGCTATGCGACTACGACGACGCATCGGAAGATGACACGACAGAATGGTCTGCTGCTGACCCGTCGGCGACCACTCCATACGCCGTGACGGTGGCCGTCCCACTGCTAAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGACGGAGAGCAATGTCAAAATGGGCAACAATTCAAAATAAACGTCACTCATGGACAGGGCCTCCCGAAGAGCATGAGAGACGAAGCTCCGGCTCCTGTAGTTCCCGACACCGGCGACCAAACCGAATCTGCTCCTGACACCATTGTCCCTTCCAACTTCGACAATCCCCAAAACGACGCTGCTGATAGTGACAAGGAGGTTTCGGGCTCAGTTTCGCTATCGCTTCACTTCAAGTTTAATGAGTTTTTCTTCGTGTTAGTTGGTATTGCCTCTGCCTGCATTTTTCTCTGTACTGAATGA 810 49.14 MVEFRVIRGEMEGAKICLGGSSSLPIHESLEELMEQRKYRADLLSPAFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYKKWTVGKNFSLGDFLIFNTDNNHSVVLTYNFTTYKLCDYDDASEDDTTEWSAADPSATTPYAVTVAVPLLKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDEAPAPVVPDTGDQTESAPDTIVPSNFDNPQNDAADSDKEVSGSVSLSLHFKFNEFFFVLVGIASACIFLCTE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 599765 602483 - CmaCh20G001260.1 Cma20g00126 315940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00126 269 SUPERFAMILY Cupredoxins 67 185 IPR008972 -
Cma20g00126 269 MobiDBLite consensus disorder prediction 210 235 - -
Cma20g00126 269 MobiDBLite consensus disorder prediction 191 235 - -
Cma20g00126 269 CDD Phytocyanin 67 185 - -
Cma20g00126 269 Pfam Plastocyanin-like domain 77 179 IPR003245 GO:0009055
Cma20g00126 269 Gene3D - 66 190 IPR008972 -
Cma20g00126 269 ProSiteProfiles Phytocyanin domain profile. 67 187 IPR003245 GO:0009055
Cma20g00126 269 PANTHER BNAA08G26900D PROTEIN 45 209 - -
Cma20g00126 269 PANTHER BLUE COPPER PROTEIN 45 209 IPR039391 GO:0009055
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00948 Cma-Chr8:5912122 Cma20g00126 Cma-Chr20:599765 4.02E-35 dispersed
Cma17g00025 Cma-Chr17:107592 Cma20g00126 Cma-Chr20:599765 4.73E-30 dispersed
Cma20g00126 Cma-Chr20:599765 Cma05g00513 Cma-Chr5:2449337 1.59E-12 dispersed
Cma20g00126 Cma-Chr20:599765 Cma02g01289 Cma-Chr2:7560023 3.77E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00126 - - cpep:111776932 483.796