Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00126 ATGGTGGAGTTTAGAGTAATTAGAGGGGAAATGGAAGGAGCCAAAATATGTCTCGGTGGTTCTAGTTCGCTTCCAATTCACGAATCCCTAGAAGAATTAATGGAACAGAGGAAGTACAGAGCCGATCTTCTTTCACCTGCCTTCCTTGTCCTCCTCCTTTTCCTCTCCCTTTCCGGTCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTATAAAAAATGGACGGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACTGACAACAATCACTCGGTTGTGCTTACGTACAACTTCACCACATACAAGCTATGCGACTACGACGACGCATCGGAAGATGACACGACAGAATGGTCTGCTGCTGACCCGTCGGCGACCACTCCATACGCCGTGACGGTGGCCGTCCCACTGCTAAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGACGGAGAGCAATGTCAAAATGGGCAACAATTCAAAATAAACGTCACTCATGGACAGGGCCTCCCGAAGAGCATGAGAGACGAAGCTCCGGCTCCTGTAGTTCCCGACACCGGCGACCAAACCGAATCTGCTCCTGACACCATTGTCCCTTCCAACTTCGACAATCCCCAAAACGACGCTGCTGATAGTGACAAGGAGGTTTCGGGCTCAGTTTCGCTATCGCTTCACTTCAAGTTTAATGAGTTTTTCTTCGTGTTAGTTGGTATTGCCTCTGCCTGCATTTTTCTCTGTACTGAATGA 810 49.14 MVEFRVIRGEMEGAKICLGGSSSLPIHESLEELMEQRKYRADLLSPAFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYKKWTVGKNFSLGDFLIFNTDNNHSVVLTYNFTTYKLCDYDDASEDDTTEWSAADPSATTPYAVTVAVPLLKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDEAPAPVVPDTGDQTESAPDTIVPSNFDNPQNDAADSDKEVSGSVSLSLHFKFNEFFFVLVGIASACIFLCTE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 599765 602483 - CmaCh20G001260.1 Cma20g00126 315940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00126 269 SUPERFAMILY Cupredoxins 67 185 IPR008972 -
Cma20g00126 269 MobiDBLite consensus disorder prediction 210 235 - -
Cma20g00126 269 MobiDBLite consensus disorder prediction 191 235 - -
Cma20g00126 269 CDD Phytocyanin 67 185 - -
Cma20g00126 269 Pfam Plastocyanin-like domain 77 179 IPR003245 GO:0009055
Cma20g00126 269 Gene3D - 66 190 IPR008972 -
Cma20g00126 269 ProSiteProfiles Phytocyanin domain profile. 67 187 IPR003245 GO:0009055
Cma20g00126 269 PANTHER BNAA08G26900D PROTEIN 45 209 - -
Cma20g00126 269 PANTHER BLUE COPPER PROTEIN 45 209 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00126 - - - cpep:111776932 483.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00948 Cma-Chr8:5912122 Cma20g00126 Cma-Chr20:599765 4.02E-35 dispersed
Cma17g00025 Cma-Chr17:107592 Cma20g00126 Cma-Chr20:599765 4.73E-30 dispersed
Cma20g00126 Cma-Chr20:599765 Cma05g00513 Cma-Chr5:2449337 1.59E-12 dispersed
Cma20g00126 Cma-Chr20:599765 Cma02g01289 Cma-Chr2:7560023 3.77E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma02g00095 . 24 145 Phytocyanin Superfamily AT4G28365 54.9 5.4e-37 151.8
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma12g00366 CCT 9 165 Phytocyanin Superfamily AT5G25090 57.1 1.1e-39 160.6
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma20g00126 . 52 259 Phytocyanin Superfamily AT1G08500 52.4 1.7e-50 196.8
Cma10g00972 . 32 172 Phytocyanin Superfamily AT2G27035 53.9 2.3e-41 166.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00126 Cma_Chr20 FPKM 16.662201 17.528666 31.584251 30.865589 4.318368 4.0558 2.642882 13.385366 13.495167 11.200917