Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00128 ATGGAATATTGCATTAATGCCGTCGCTCTCACAAGATTGGTGATCTTCCTAGCCGCTTTTGCAGCCATCTTCGCTGCTACACCACCGGTTTCCGAAGAACCCAACTGCGGTGCTGCATCATCGGCTTCCGCCGAAGGCACCTGCTCTACTACACCACCGGATGCCCCCGCAGAAGCCACCTCCGCCTCTCCTACAGCAGAGGTTCCCGCAGAAAAGTCGCAATTAGAAGCTTGGTTTTCCGAAAACGTGAAGCCCTTAAGCGCTCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTCAAAGTAAGGGCCGACGGAAGTGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCCGCCGGTAACACCAAACGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATAAGCCTTTCATTACCCTTTACGGTTCCCCTAACAATATGCCAAACTTGACATTTGATGGAGATGCCAAAAAATACGGCACCGTCTACAGTGCCACCTTGATCGTCGAGGCTGAGTATTTCGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCATTGGAGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAACTGCAAATTCATAGGGTTTCAAGACACCCTGTGCGACGACGATGGGATGCATGTGTACGATGGGATGCATGTGTACAAGGACAGCTTACGGTTTCATGTATCCACCGTAAGCCTTTCTTCGTTTGAACCTCGCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAATGTGGTGGGAGTCGGTGGATTGGGGGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCGAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCGAACACTTACTTGGGAAGATCTTGGAGGCCTTGGTCTAGAGTTGTGTTTGCCTACACCACCATTGCCGACGTCCTTCATCCTGAAGGCTGGGACGACATGAACCACCCTGATTTCGACAAGACGGTTTTCTTCGGAGAATATAAGAGTTCGGGGCCGGGAGCGGAGACGAGCAGCCGCATAAAATTCAGCAAACAGTTGAGTGATGCAGAAGTGAAACCGTTCCTCAGCCTTGATTACGTGCAGGCCCAAAAGTGGCTGCTTCCTCCTCCCAAGCTATAG 1254 52.07 MEYCINAVALTRLVIFLAAFAAIFAATPPVSEEPNCGAASSASAEGTCSTTPPDAPAEATSASPTAEVPAEKSQLEAWFSENVKPLSARKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNKPFITLYGSPNNMPNLTFDGDAKKYGTVYSATLIVEAEYFVAANLVIENTSPRPDARKGGPALEARIRGNKAAIYNCKFIGFQDTLCDDDGMHVYDGMHVYKDSLRFHVSTVSLSSFEPRIFGKATSLYLNSQLNVVGVGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLGRSWRPWSRVVFAYTTIADVLHPEGWDDMNHPDFDKTVFFGEYKSSGPGAETSSRIKFSKQLSDAEVKPFLSLDYVQAQKWLLPPPKL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 607476 609291 + CmaCh20G001280.1 Cma20g00128 315942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00128 417 Pfam Pectinesterase 107 406 IPR000070 GO:0030599|GO:0042545
Cma20g00128 417 Gene3D - 100 413 IPR012334 -
Cma20g00128 417 MobiDBLite consensus disorder prediction 34 67 - -
Cma20g00128 417 MobiDBLite consensus disorder prediction 34 58 - -
Cma20g00128 417 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 412 - -
Cma20g00128 417 SUPERFAMILY Pectin lyase-like 103 411 IPR011050 -
Cma20g00128 417 PANTHER PECTINESTERASE 63-RELATED 72 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00128 Cma-Chr20:607476 Cma20g00134 Cma-Chr20:625374 0 dispersed
Cma20g00128 Cma-Chr20:607476 Cma20g00129 Cma-Chr20:607963 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00128 K01051 - csv:101205095 498.434