Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00129 ATGAATATTGCTCTCTCAGCATTGGTGATCTTCCTCGCAGCTTTTGCACCCATCTCTTCTGCTACAACAGAGGTTCCTGCAGAGAAGTCGCAGTTAGAAGCTTGGTTTTCCGGACATGTGAAGCCCTTGGCCGCCCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTCAAAGTAAGGGCCGACGGAAGTGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCCGCCGGTAACACCAAGCGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATCAGCCTTTCATTACCCTTTACGGTTCCCCTAACAATATGCCAAACTTGACATTTGATGGAGATGCCAAAAAATACGGCACCGTCTACAGTGCCACTTTGATCGTCGAGGCTGAGTATTTCGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAACTGCAAATTCATAGGGTTTCAAGACACCCTGTGCGACGACGACGGGTTGCATGTGTACAAGGATTGCTTCATTCAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGGCCCTGTATTTGAACAGTCAGCTGAATGTGTTGGGAGTCGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCGAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACCGGCGGGCCGAACACTTATTTGGGAAGATCTTGGAGGCCCTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCTGACATCCTTCATCCCGAAGGCTGGGACGACATGAACAACCCGGCTTTTGACAAGACAGTTTTCTTCGGAGAATTTAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGAGTGAAGCACAAGCGAAACCCTTCATCAACCTTGATTACGTATTCAAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTGTTGACTATTGAATGGGAACAAGTTCATATTCGAATTGTCGTTGAGGAACAACAGCTCGACGCGCCATCAAATCTTCCTTACCGCCAAAACTCCTCCAACACTGAAAGTTCAAGGGCTCTTCTACGAGCCTATTATTTCGGGAGAAAAAAAATATGGGGCCCCTCATTCTATATAATCCCAACGTACTCATCCACCCATCCTTATTTAAAAAATAAAATAAATAACTTAAATATGAATATTGCTCTCACAACATTGGTGGTCTTCCTAGCAGCTTTTGCACCCATCTCCTGTGCTACATCAGAGGTTCCGGCAGAAAAGTCGCGATTAGAATCTTGGTTTTCGGAACATGTGAAGCCCTTAGCGGCCCGCAAGGCGGATCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTCAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACTATCACCAAAGCCATTGCCAGCGTTCCTGTTGGTAACACCAAGCGCGTCGTGATTTGGATTGGAGGAGGGGTTTATAAAGAGAAGGTTACGATCGATAGGAATAAGCCATTCATTACCCTTTATGGCTCTCCTAACAATATGCCAAACTTGACATTTGATGGAGACGCTACAAAATACGGCACCGTTTACAGTGCAACTTTGATCGTCGAGGCTGATTATTTCGTTGCTGCAAATCTCGTGATTGAGAATTCATCTCCAAGGCCGGAAGGGATAAAAGGAGGTCAAGCATTAGCGGCGAGAATAAGAGGTAATAAAGCAGCGATTTACAATTGCAAATTCATAGGGTTTCAAGACACCCTGTGCGACGATGACGGGTTGCATTTTTACAAAGATTGCTTCGTCCAGGGCACAGTGGACTTCATCTTCGGGAAGGGAACGTCCCTTCATTTGAACACTCACATGAACGTGGTGGGAATCGGGGGATTGGGAGTGGTGGCAGCGCATTCAAGAGAAAAGGAAGATGACCCGAGTGGGTATGTGTTCGCGCATTGCAGCATCACAGGAACAGGGGGGAAAAACACTTATCTGGGAAGATCATGGAGGCCATGGTCTAGAGTTGTGTTCGCCTATACCAGCATTGCGGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCCGCTTATGACCATACGGTTTTCTACGGAGAATACAAGTGTTCGGGGCTGGGAGCGGTATCCACCGGGCGTGCCAAATTCGGGAAGCAGCTCAGTAAAGCACAATTGCTCGTCTTCCTAAACCTAAAACCGAATAGATTAAAGCCCAGAAATTTGATTCGGTTGAAGTGCTTGGTTCTTTATCTTCTCCTTTATACTATTTCAAATCAAATATATCCAAAATGCAATGGAAAAGAGACTGCAATACTTGGGAGGAGGAAGCAGCCACTTTTGGGCCTGCACGTAATCAAGGCTGAGGAACGGTTTCACTTCTGCATCACTCAACTGTTTGCTGAATTTTATGCGGCTGCTCGTCTCCGCTCCCGGCCCCGAACTCTTATATTCTCCGAAGAAAACCGTCTTGTCGAAATCAGGGTGGTTCATGTCGTCCCAGCCTTCAGGATGAAGGACGTCGGCAATGGTGGTGTAGGCAAACACAACTCTAGACCAAGGCCTCCAAGATCTTCCCAAGGACGTTGCCTTCCCGAAGATGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCAAAACGACAACCAATTAACCGTAATACGCATTTAATTGACAAATTACCTCGATCACGAGATTGGCAGCAACGAAATACTCAGCCTCGACGATCAAGGTGGCACTGTAGACGGTGCCGTATTTTTTGGCATCTCCATCAAATGTCAAGTTTGGCATATTGTTAG 2982 48.22 MNIALSALVIFLAAFAPISSATTEVPAEKSQLEAWFSGHVKPLAARKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNQPFITLYGSPNNMPNLTFDGDAKKYGTVYSATLIVEAEYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFIGFQDTLCDDDGLHVYKDCFIQGTVDFIFGKATALYLNSQLNVLGVGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLGRSWRPWSRVVFAYTTIADILHPEGWDDMNNPAFDKTVFFGEFKCSGPGAETSKRVKFSKQLSEAQAKPFINLDYVFKEQIVPARYRQELLTIEWEQVHIRIVVEEQQLDAPSNLPYRQNSSNTESSRALLRAYYFGRKKIWGPSFYIIPTYSSTHPYLKNKINNLNMNIALTTLVVFLAAFAPISCATSEVPAEKSRLESWFSEHVKPLAARKADLDPALVAAEESSTVVKVRADGSGDFKTITKAIASVPVGNTKRVVIWIGGGVYKEKVTIDRNKPFITLYGSPNNMPNLTFDGDATKYGTVYSATLIVEADYFVAANLVIENSSPRPEGIKGGQALAARIRGNKAAIYNCKFIGFQDTLCDDDGLHFYKDCFVQGTVDFIFGKGTSLHLNTHMNVVGIGGLGVVAAHSREKEDDPSGYVFAHCSITGTGGKNTYLGRSWRPWSRVVFAYTSIADILHPEGWDDMNNPAYDHTVFYGEYKCSGLGAVSTGRAKFGKQLSKAQLLVFLNLKPNRLKPRNLIRLKCLVLYLLLYTISNQIYPKCNGKETAILGRRKQPLLGLHVIKAEERFHFCITQLFAEFYAAARLRSRPRTLIFSEENRLVEIRVVHVVPAFRMKDVGNGGVGKHNSRPRPPRSSQGRCLPEDARFKRRKAYGGYLGTQRRGRAKRQPINRNTHLIDKLPRSRDWQQRNTQPRRSRWHCRRCRIFWHLHQMSSLAYC 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 607963 619482 - CmaCh20G001290.1 Cma20g00129 315943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00129 993 SUPERFAMILY Pectin lyase-like 60 351 IPR011050 -
Cma20g00129 993 Pfam Pectinesterase 503 769 IPR000070 GO:0030599|GO:0042545
Cma20g00129 993 Pfam Pectinesterase 64 345 IPR000070 GO:0030599|GO:0042545
Cma20g00129 993 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Cma20g00129 993 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 351 - -
Cma20g00129 993 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 468 784 - -
Cma20g00129 993 SUPERFAMILY Pectin lyase-like 499 779 IPR011050 -
Cma20g00129 993 MobiDBLite consensus disorder prediction 946 967 - -
Cma20g00129 993 MobiDBLite consensus disorder prediction 933 968 - -
Cma20g00129 993 MobiDBLite consensus disorder prediction 895 916 - -
Cma20g00129 993 ProSitePatterns Pectinesterase signature 2. 649 658 IPR033131 -
Cma20g00129 993 Gene3D - 58 361 IPR012334 -
Cma20g00129 993 Gene3D - 497 785 IPR012334 -
Cma20g00129 993 PANTHER PECTINESTERASE 63-RELATED 29 351 - -
Cma20g00129 993 PANTHER PECTINESTERASE 63-RELATED 468 784 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00129 Cma-Chr20:607963 Cma20g00133 Cma-Chr20:623872 0 dispersed
Cma20g00128 Cma-Chr20:607476 Cma20g00129 Cma-Chr20:607963 0 tandem
Cma20g00129 Cma-Chr20:607963 Cma20g00130 Cma-Chr20:612438 5.15E-46 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00129 K01051 - csv:101205095 514.227