Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00133 ATGAATATTGCTCTCTCAGCATTGGTGATCTTCCTCGCAGCTTTTGCACCCATCTCTTCTGCTACAACAGAGGTTCCTGCAGAGAAGTCGCAGTTAGAAGCTTGGTTTTCCGGACATGTGAAGCCCTTGGCCGCCCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTCAAAGTAAGGGCCGACGGAAGTGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATAAGCCTTTCATTACCCTTTACGGTTCCCCTAACAATATGCCAAACTTGACATTTGATGGAGATGCCAAAAAATACGGCACCGTCTACAGTGCCACCTTGATCGTCGAGGCTGAGTATTTCGTTGCTGCCAATCTCGTGATCGAGAATTCATCTCCAAGACCGGATGGGAGAGAAGGAGGTCAGGCATTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAACTGCAAATTCATAGGGTTTCAAGACACCCTGTGCGACGACGACGGGTTGCATGTGTACAAGGATTGCTTCATTCAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGGCCCTGTATTTGAACAGTCAGCTGAATGTGGTGGGAGTCGGGGGATTGGGAGTGGTTGCAGCACATTCAAGAGAAAAGGAAGACGACCCGAGTGGGTACGTGTTTGCGCATTGCAGCATTACAGGCACCGGCGGGCCAAACACTTATTTGGGAAGATCTTGGAGGCCCTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCTGACATCCTTCATCCCGAAGGCTGGGACGACATGAGCAACCCGGCTTTTGACAAGACGGTTTTCTTCGGAGAATTTAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGAGTGAAGCACAAGCGAAACCCTTCATCAACCTTGATTACGTGCAGGCCCAAAAGTGGCTGCTTCCTCCTCCCAAACTATAG 1083 51.43 MNIALSALVIFLAAFAPISSATTEVPAEKSQLEAWFSGHVKPLAARKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNKPFITLYGSPNNMPNLTFDGDAKKYGTVYSATLIVEAEYFVAANLVIENSSPRPDGREGGQALAARIRGNKAAIYNCKFIGFQDTLCDDDGLHVYKDCFIQGTVDFIFGKATALYLNSQLNVVGVGGLGVVAAHSREKEDDPSGYVFAHCSITGTGGPNTYLGRSWRPWSRVVFAYTTIADILHPEGWDDMSNPAFDKTVFFGEFKCSGPGAETSKRVKFSKQLSEAQAKPFINLDYVQAQKWLLPPPKL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 623872 625079 - CmaCh20G001330.1 Cma20g00133 315947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00133 360 Pfam Pectinesterase 64 349 IPR000070 GO:0030599|GO:0042545
Cma20g00133 360 Gene3D - 57 356 IPR012334 -
Cma20g00133 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 355 - -
Cma20g00133 360 PANTHER PECTINESTERASE 63-RELATED 29 355 - -
Cma20g00133 360 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Cma20g00133 360 SUPERFAMILY Pectin lyase-like 60 354 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01014 Cma-Chr17:7377689 Cma20g00133 Cma-Chr20:623872 2.24E-85 dispersed
Cma20g00129 Cma-Chr20:607963 Cma20g00133 Cma-Chr20:623872 0 dispersed
Cma20g00133 Cma-Chr20:623872 Cma20g01082 Cma-Chr20:8314197 0 dispersed
Cma20g00133 Cma-Chr20:623872 Cma20g00134 Cma-Chr20:625374 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00133 K01051 - csv:101205095 530.791