Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00134 ATGGAATATGGCATTAATGCCGTCGCTCTCACAAGATTGGTGATCTTCCTAGCCGCTTTTGCAGCCATCTTCGCTGCTACACCACCGGTTTCCGAAGAACCCAACTGCGGTGCTGCATCATCGGCTTCCGCCGAAGGCACCTGCTCTACTACACCACCGGATGCCCCCGCAGAAGCCACCTCCGCCTCTCCTACAGCAGAGGTTCCCGCAGAAAAGTCGCAATTAGAAGCTTGGTTTTCCAAAAACGTGAAGCCCTTAAGCGCTCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTCAAAGTAAGGGCCGACGGAAGTGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAGGAGAAGCTTACGATCGAGAGAAATAAGCCTTTCATTACCCTTTACGGTTCCCCTAACAATATGCCAAACTTGACATTTGATGGAGATGCCAAAAAATACGGCACCGTCTACAGTGCCACCTTGATCGTCGAGGCTGAGTATTTCGTTGCTGCCAATCTCGTGATCGAGAATTCATCTCCAAGACCGGATGGGAGAGAAGGAGGTCAGGCATTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAACTGCAAATTCATAGGGTTTCAAGACACCCTGTGCGACGACGATGGGATGCATGTGTACAAGGATAGCTTCATCGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAATGTGGTGGGAGTCGGTGGATTGGGGGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCGAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCGAACACTTACTTGGGAAGATCTTGGAGGCCTTGGTCTAGAGTTGTGTTTGCCTACACCACCATTGCCGACGTCCTTCATCCTGAAGGCTGGGACGACATGAACCACCCTGATTTCGACAAGACGGTTTTCTTCGGAGAATATAAGAGTTCGGGGCCGGGAGCGGAGACGAGCAGCCGCATAAAATTCAGCAAACAGTTGAGTGATGCAGAAGTGAAACCGTTCCTCAGCCTTGATTACGTGCAGGCCCAAAAGTGGCTGCTTCCTCCTCCCAAGCTATAG 1212 52.23 MEYGINAVALTRLVIFLAAFAAIFAATPPVSEEPNCGAASSASAEGTCSTTPPDAPAEATSASPTAEVPAEKSQLEAWFSKNVKPLSARKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNKPFITLYGSPNNMPNLTFDGDAKKYGTVYSATLIVEAEYFVAANLVIENSSPRPDGREGGQALAARIRGNKAAIYNCKFIGFQDTLCDDDGMHVYKDSFIEGTVDFIFGKATSLYLNSQLNVVGVGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLGRSWRPWSRVVFAYTTIADVLHPEGWDDMNHPDFDKTVFFGEYKSSGPGAETSSRIKFSKQLSDAEVKPFLSLDYVQAQKWLLPPPKL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 625374 626956 + CmaCh20G001340.1 Cma20g00134 315948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00134 403 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Cma20g00134 403 PANTHER PECTINESTERASE 63-RELATED 72 398 - -
Cma20g00134 403 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 398 - -
Cma20g00134 403 Pfam Pectinesterase 107 392 IPR000070 GO:0030599|GO:0042545
Cma20g00134 403 MobiDBLite consensus disorder prediction 34 67 - -
Cma20g00134 403 MobiDBLite consensus disorder prediction 34 58 - -
Cma20g00134 403 SUPERFAMILY Pectin lyase-like 103 397 IPR011050 -
Cma20g00134 403 Gene3D - 100 399 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00128 Cma-Chr20:607476 Cma20g00134 Cma-Chr20:625374 0 dispersed
Cma20g00134 Cma-Chr20:625374 Cma20g01082 Cma-Chr20:8314197 0 dispersed
Cma20g00133 Cma-Chr20:623872 Cma20g00134 Cma-Chr20:625374 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00134 K01051 - csv:101205095 532.717