Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00138 ATGAAATTTTACAAAAAAAGATGGGGATATAATCAATGTACAAATTCAAAGGCATCGACAGTAGCAACTCTCTCAAGAGTAGTTCTATTGCTTCTTAGCTTGATTATTGCATGGGCAAAGAGAAACGCTGGAGCAGGTGATGAAATTCTGTACATGCAAGTTTTAAGGGAGAGTGTAATTTTAATAGATTTGGTGCATGGCTGGGGAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAGGACTTTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGGAACACCTACAAGCTGAGAACCTTACTTTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTGCCTGAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGCTCGTAAGAATCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACGTATGGGGATACAGTTCCTGCAGTGA 567 40.21 MKFYKKRWGYNQCTNSKASTVATLSRVVLLLLSLIIAWAKRNAGAGDEILYMQVLRESVILIDLVHGWGKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTFFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQARKNPLDGVPPAVKAALTKAYKEVSKTRMGIQFLQ 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 664760 669682 - CmaCh20G001380.1 Cma20g00138 315952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00138 188 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 68 181 - -
Cma20g00138 188 Pfam Replication factor RFC1 C terminal domain 68 175 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cma20g00138 188 PANTHER REPLICATION FACTOR C SUBUNIT 1 68 181 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00980 Cma20g00138 CCT
Cma10g00980 Cma20g00138 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01296 Cma-Chr2:7612932 Cma20g00138 Cma-Chr20:664760 3.82E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00138 K10754 - cmax:111484577 267.7