Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00147 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCCAATTCTGACGGAACTCACACTCTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACACCCACTCTCAAACGCCACCCAGTATGCTCTTTCTCAACCCTTCTGGACACGCGCATAACCCTTCCACTCTCCCTCACGCGCCGCCTTCTAACAACCACTTCGTCGGAATTCCACTCTCCACCACCGACGCTCCACGTCCATCCTACGCTTCTCAATCCGCTCACGAAATCTCAGCCCTCCATCCTATGCCATCTCAGCGTCTCCACTACAATCTATGGGCTCCTATGGATCAACAAACCCACCACGGAATCTCCACCGTGTCGGCCACCACCGACTCTACCGATTTGTGCTTCCGCCGTCCGACGACACAACAGGGTTTGTCCTTGAGCCTCTCCTCCCAACAGTCGCTTTACCGGACGCTATCAGCGGAGCAGGAGATTCAAGGAGGCGGCGGCGCTCCGGCAATCTCGCCGACGAGTGGGGATGATATTCGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCAAGTGGAATTACGGGGGTTCAAAGTGTGATATTGGGATCCAAATACTTGAAAGCGGCACAAGAACTTTTGGATGAAGTGGTTAATGTTGGGAAAGGAAATTATAAAACCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGGAGGAGCGCCCTCCGGCGGTGGTGAAACCACTTCCAAGCCTGCCGCCGAGCTTAGCACTGCTCAAAGACAAGACCTTCAGATGAAGAAAGCTAAGCTTATTGGAATGCTTGATGAGGTGGAGCAGAAGTACAGACAGTACCACCAGCAAATGCAAGCAGTGGTCAATTGCTTCGAGCAGGCGGCAGGGTTGGGGTCAGCCAAGTCCTACGCCTCCCTCGCACTCGAAACCATTTCAAAGCAATTCCGGTGCTTAAAAGACGCAATATGTGCACAAATTAAAGCCACAGGCAAAAGCTTGGGCGAAGAGGATTGGTTGGGTGCCAAAATTGAAGGGTCAAGATTGAGATACGTGGACCATCATCTACGCCAACAAAGAGCTTTACAACAATTGGGTATGATTCAACACAACACTTGGAGACCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCATTTCCTTCACCCGTATCCAAAGGATTCAGATAAGATCATCCTCGCAAAACAAACGGGACTCACAAGGAGCCAAGTATCTAATTGGTTCATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTACTTGGAGGAAATCAAGGAACAAGAACAAAACGGGGATTCCCACGACATGCTTAGAACCAACAAAAACGAACCCAACAAGCAACATGGCCGCGGAGGAGGAGATCAGAATAATAACAACAATATTAAGGATGATCCTGCACAGTCGAAGACAGAAAATTTGATGAACAACCAAAACAATATCCATGCAAATCCCAAGAAACAAAGGACAACGACCGCCGCAAACAACAACCTGGAAACCCCATCCACAAAAACCATGCTTTTAAGGGATATCGACACAACAAAACACCTTCTTCAAACCACGGCAGAGATGAACATGAATCATCATCATTATCATGGGGGAGGGGGAGGATTTGGTGCGTACCCAGTTGGTGAAATTGGAACAAGGTTCAATTCCGAGCTCCTCACACCAAGATTCCATGGAAATGGCGTCTCTCTCACTCTTGGCCTTCCACATTCGGACACCCAACACAATTACCACTTGGGGAGAAGGCTTGATATCACCAATGGAGGAGGGCCCGATTTCTCCGACATCAATCCCACTCCGCCCCCGCCCCCGCCACCTCATTCTGCCTCGACCGCCTACGACCATGTCGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTGGCTTGA 2004 49.7 MATYFHGGSEIQANSDGTHTLYLMNPNYVPYSDTHSQTPPSMLFLNPSGHAHNPSTLPHAPPSNNHFVGIPLSTTDAPRPSYASQSAHEISALHPMPSQRLHYNLWAPMDQQTHHGISTVSATTDSTDLCFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGAPAISPTSGDDIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVNVGKGNYKTDKGDGTKDKMKMKKESTAAIGGAPSGGGETTSKPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVVNCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEDWLGAKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSHDMLRTNKNEPNKQHGRGGGDQNNNNNIKDDPAQSKTENLMNNQNNIHANPKKQRTTTAANNNLETPSTKTMLLRDIDTTKHLLQTTAEMNMNHHHYHGGGGGFGAYPVGEIGTRFNSELLTPRFHGNGVSLTLGLPHSDTQHNYHLGRRLDITNGGGPDFSDINPTPPPPPPPHSASTAYDHVEMQTTKRFAAQLLPDFVA 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 726212 729162 - CmaCh20G001470.1 Cma20g00147 315961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00147 667 MobiDBLite consensus disorder prediction 458 533 - -
Cma20g00147 667 MobiDBLite consensus disorder prediction 481 533 - -
Cma20g00147 667 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Cma20g00147 667 MobiDBLite consensus disorder prediction 628 642 - -
Cma20g00147 667 MobiDBLite consensus disorder prediction 614 644 - -
Cma20g00147 667 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Cma20g00147 667 Coils Coil 270 297 - -
Cma20g00147 667 Gene3D - 389 467 - -
Cma20g00147 667 CDD homeodomain 386 447 IPR001356 GO:0003677
Cma20g00147 667 MobiDBLite consensus disorder prediction 458 480 - -
Cma20g00147 667 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 621 - -
Cma20g00147 667 SMART HOX_1 386 450 IPR001356 GO:0003677
Cma20g00147 667 MobiDBLite consensus disorder prediction 228 269 - -
Cma20g00147 667 MobiDBLite consensus disorder prediction 159 183 - -
Cma20g00147 667 SUPERFAMILY Homeodomain-like 387 452 IPR009057 -
Cma20g00147 667 MobiDBLite consensus disorder prediction 228 242 - -
Cma20g00147 667 Pfam Associated with HOX 200 336 IPR006563 -
Cma20g00147 667 SMART prehox3 195 338 IPR006563 -
Cma20g00147 667 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00107 Cma-Chr14:468152 Cma20g00147 Cma-Chr20:726212 5.86E-68 dispersed
Cma20g00147 Cma-Chr20:726212 Cma20g00823 Cma-Chr20:3913634 2.70E-91 dispersed
Cma14g00361 Cma-Chr14:1592554 Cma20g00147 Cma-Chr20:726212 9.35E-15 wgd
Cma02g01304 Cma-Chr2:7678031 Cma20g00147 Cma-Chr20:726212 0 wgd
Cma20g00147 Cma-Chr20:726212 Cma06g00526 Cma-Chr6:2460707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36963 PF07526 POX 1.40E-47 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00147 - - cmax:111490715 867.84