Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00153 ATGTCGGGTTCTAGAGCTCCTAACTCCTCTGGACACCTTCCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTTTGAAACCGCCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCCATCGTAGTCAGATCTCCGCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGACTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTAGCTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTTACTAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAACGTTGGTTCACCTTCTGCCAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAGAAGTTTATTAACCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTGAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCCGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGACCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGAAAAGTTTGAGGAGATAAATGGCGTGGAAGTGCCACCAAGCTTGCCGTCAAGTTCAGGCTTTAATGAAGCACCTGCAACGACGATAGGAACTGAGGATACCAGGGGAAAGGAAATTGAAACGCGGGAACAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCCGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGATTTGGGTACATTTCATGAAGATTACAGTATTGCCAATGACAGCACCCCCGAAACCCAGAATCCACTTCCCAATAATGCACCTGATATGCCTTCTTCTGCTAATCCTTCTAGCAGCTGA 1392 46.05 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSLKPPFASPGDYHRFAPDPRLADQEADAIVVRSPQLKRKSEVADYEADSTDRAAGPRFTEVANSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNEAPATTIGTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNDLGTFHEDYSIANDSTPETQNPLPNNAPDMPSSANPSSS 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 751925 758577 + CmaCh20G001530.1 Cma20g00153 315967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00153 463 MobiDBLite consensus disorder prediction 334 353 - -
Cma20g00153 463 PANTHER TRANSCRIPTION FACTOR E2F 18 453 IPR015633 GO:0000978|GO:0006357
Cma20g00153 463 MobiDBLite consensus disorder prediction 1 15 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 433 463 - -
Cma20g00153 463 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cma20g00153 463 Gene3D - 212 322 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 336 353 - -
Cma20g00153 463 Coils Coil 218 255 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 1 23 - -
Cma20g00153 463 CDD E2F_DD 216 322 IPR032198 GO:0046983
Cma20g00153 463 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983
Cma20g00153 463 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cma20g00153 463 MobiDBLite consensus disorder prediction 109 134 - -
Cma20g00153 463 Coils Coil 156 176 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 87 134 - -
Cma20g00153 463 Gene3D - 134 207 IPR036388 -
Cma20g00153 463 PANTHER TRANSCRIPTION FACTOR E2FB 18 453 - -
Cma20g00153 463 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cma20g00153 463 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00153 K06620 E2F3; transcription factor E2F3 - csv:101219318 862.833
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01309 Cma20g00153 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01126 Cma-Chr3:7646164 Cma20g00153 Cma-Chr20:751925 5.34E-164 dispersed
Cma05g00301 Cma-Chr5:1301819 Cma20g00153 Cma-Chr20:751925 7.07E-79 dispersed
Cma07g00828 Cma-Chr7:3838530 Cma20g00153 Cma-Chr20:751925 4.80E-131 dispersed
Cma10g00152 Cma-Chr10:697829 Cma20g00153 Cma-Chr20:751925 1.69E-10 dispersed
Cma12g00412 Cma-Chr12:2131679 Cma20g00153 Cma-Chr20:751925 6.33E-85 dispersed
Cma18g00144 Cma-Chr18:726434 Cma20g00153 Cma-Chr20:751925 2.18E-11 dispersed
Cma20g00153 Cma-Chr20:751925 Cma13g00908 Cma-Chr13:7271261 4.62E-07 dispersed
Cma02g01309 Cma-Chr2:7700431 Cma20g00153 Cma-Chr20:751925 1.09E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36964 PF16421 E2F_CC-MB 2.90E-35 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00153 Cma_Chr20 FPKM 6.622416 7.755591 4.909715 4.600776 8.534883 7.328816 8.427872 3.454043 3.738198 2.92671