Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00153 ATGTCGGGTTCTAGAGCTCCTAACTCCTCTGGACACCTTCCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTTTGAAACCGCCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCCATCGTAGTCAGATCTCCGCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGACTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTAGCTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTTACTAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAACGTTGGTTCACCTTCTGCCAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAGAAGTTTATTAACCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTGAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCCGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGACCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGAAAAGTTTGAGGAGATAAATGGCGTGGAAGTGCCACCAAGCTTGCCGTCAAGTTCAGGCTTTAATGAAGCACCTGCAACGACGATAGGAACTGAGGATACCAGGGGAAAGGAAATTGAAACGCGGGAACAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCCGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGATTTGGGTACATTTCATGAAGATTACAGTATTGCCAATGACAGCACCCCCGAAACCCAGAATCCACTTCCCAATAATGCACCTGATATGCCTTCTTCTGCTAATCCTTCTAGCAGCTGA 1392 46.05 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSLKPPFASPGDYHRFAPDPRLADQEADAIVVRSPQLKRKSEVADYEADSTDRAAGPRFTEVANSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNEAPATTIGTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNDLGTFHEDYSIANDSTPETQNPLPNNAPDMPSSANPSSS 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 751925 758577 + CmaCh20G001530.1 Cma20g00153 315967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00153 463 MobiDBLite consensus disorder prediction 334 353 - -
Cma20g00153 463 PANTHER TRANSCRIPTION FACTOR E2F 18 453 IPR015633 GO:0000978|GO:0006357
Cma20g00153 463 MobiDBLite consensus disorder prediction 1 15 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 433 463 - -
Cma20g00153 463 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cma20g00153 463 Gene3D - 212 322 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 336 353 - -
Cma20g00153 463 Coils Coil 218 255 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 1 23 - -
Cma20g00153 463 CDD E2F_DD 216 322 IPR032198 GO:0046983
Cma20g00153 463 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983
Cma20g00153 463 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cma20g00153 463 MobiDBLite consensus disorder prediction 109 134 - -
Cma20g00153 463 Coils Coil 156 176 - -
Cma20g00153 463 MobiDBLite consensus disorder prediction 87 134 - -
Cma20g00153 463 Gene3D - 134 207 IPR036388 -
Cma20g00153 463 PANTHER TRANSCRIPTION FACTOR E2FB 18 453 - -
Cma20g00153 463 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cma20g00153 463 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01309 Cma20g00153 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01126 Cma-Chr3:7646164 Cma20g00153 Cma-Chr20:751925 5.34E-164 dispersed
Cma05g00301 Cma-Chr5:1301819 Cma20g00153 Cma-Chr20:751925 7.07E-79 dispersed
Cma07g00828 Cma-Chr7:3838530 Cma20g00153 Cma-Chr20:751925 4.80E-131 dispersed
Cma10g00152 Cma-Chr10:697829 Cma20g00153 Cma-Chr20:751925 1.69E-10 dispersed
Cma12g00412 Cma-Chr12:2131679 Cma20g00153 Cma-Chr20:751925 6.33E-85 dispersed
Cma18g00144 Cma-Chr18:726434 Cma20g00153 Cma-Chr20:751925 2.18E-11 dispersed
Cma20g00153 Cma-Chr20:751925 Cma13g00908 Cma-Chr13:7271261 4.62E-07 dispersed
Cma02g01309 Cma-Chr2:7700431 Cma20g00153 Cma-Chr20:751925 1.09E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36964 PF16421 E2F_CC-MB 2.90E-35 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00153 K06620 - csv:101219318 862.833