Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00170 ATGACGAGCAACAGAGTGGAAGAAACCGCACCTTCTTCAACCCATCACCTTCCTCACAATTCACATCTTTATGCAATCAACTACAACAATCCCTCCTCCACTTGCGAAGCTTTTGATATTGGAGAATTGGAACAAGCAATCGTGTTACAAGAACACGAAGCTAAGAACAAACTCGATCATCACCAATCCAAACAAACCTTTTTCTCAGGCAGGCCTGCTGCTGCCACTGCTGCTACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCCACAGGAATGAGTTCGAGACGAAGAGAAGAGAGCACTGATGAATCTCCCATGACTAAAAAGCCCTGTCCATCTACTTCTTCTGCAGCTCATCAGGGCTTTATTCAGAAGCAGATTCACCCTGAAATGATACTCACGGATGTTTCAGCTCAACATCACTCCCTTCGACAAAAGAGAAAAGGATGTGGTTCGATTTCAACATCACAGAAGCAACTTGATGCTAAGACATTGAGACGTTTGGCTCAGAATAGAGAGGCTGCCAGGAAGAGTCGCCTAAGGAAAAAGGCTTACGTACAGCAACTTGAGAGCAGTAGAGTCAAGCTCACGCAGCTTGAACAAGACCTTCAACGGGCACGAGCTCAGGGTTTGTTTCTTGGTGCCTGCGGTGGTGGCGGCGGCATTATCAGCCCAGGAGGTGCAATGTTTGACATGGAATATGCAAGGTGGCTGGAAGAGGACCACCGGCACACGGCGGAGCTGCGCGGGGGATTGGAGGCACGCCTACCGGACGTGGAGCTGAGAGTGAAGGTAGACGCATGCATTTGCCATTACGACCAAATTTTCCGGCTGAAAGGAGAGGCTGCTAAGTCCGACATCTTCCACCTCATCGCCGGCATCTGGATGTCTCCGGCCGAGCGTTGCTTCCTTTGGATTGGTGGATTCCGGCCCTCCGATCTCATCAAGATTTTGCTGTCACAATTGGACCCAATCACAGAACAGCAAGTGGTGGAAATTTACAAGCTACAGCATTCGTCACAGCAGGCTGAAGATGCTTTATCTCAAGGTCTTGATCAGCTCCATCAGTCTTTGACGGACACCGTAGCCGGCGGTCCGGTCATCGACGGCATCAACCACATGGTTTTGGCCATGGACAAGATCTCTCATCTCCAAGGCTTTCTCCATCAGGCGGATATTTTAAGACAACAAACGCTTCACCAATTACATAGGATGTTCACCGTCCGACAAGCAGCCAGATATTTTATAGTTATTAGTGAATATTACACTAGATTACGAGCGCTAAGCTCCATATGGTCCTCTCGTCCAAAGGACTAA 1332 48.57 MTSNRVEETAPSSTHHLPHNSHLYAINYNNPSSTCEAFDIGELEQAIVLQEHEAKNKLDHHQSKQTFFSGRPAAATAATLEMFPSWPIKFQQTPTGMSSRRREESTDESPMTKKPCPSTSSAAHQGFIQKQIHPEMILTDVSAQHHSLRQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLTQLEQDLQRARAQGLFLGACGGGGGIISPGGAMFDMEYARWLEEDHRHTAELRGGLEARLPDVELRVKVDACICHYDQIFRLKGEAAKSDIFHLIAGIWMSPAERCFLWIGGFRPSDLIKILLSQLDPITEQQVVEIYKLQHSSQQAEDALSQGLDQLHQSLTDTVAGGPVIDGINHMVLAMDKISHLQGFLHQADILRQQTLHQLHRMFTVRQAARYFIVISEYYTRLRALSSIWSSRPKD 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 819556 823583 - CmaCh20G001700.1 Cma20g00170 315984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00170 443 Coils Coil 187 214 - -
Cma20g00170 443 MobiDBLite consensus disorder prediction 89 124 - -
Cma20g00170 443 Pfam bZIP transcription factor 167 208 IPR004827 GO:0003700|GO:0006355
Cma20g00170 443 ProSiteProfiles DOG1 domain profile. 232 440 IPR025422 GO:0006351|GO:0043565
Cma20g00170 443 SUPERFAMILY Leucine zipper domain 168 210 IPR046347 GO:0003700|GO:0006355
Cma20g00170 443 SMART brlzneu 164 219 IPR004827 GO:0003700|GO:0006355
Cma20g00170 443 PANTHER TRANSCRIPTION FACTOR TGA9 69 443 - -
Cma20g00170 443 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 166 210 IPR004827 GO:0003700|GO:0006355
Cma20g00170 443 Gene3D - 167 216 - -
Cma20g00170 443 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 171 186 IPR004827 GO:0003700|GO:0006355
Cma20g00170 443 PANTHER TRANSCRIPTION FACTOR TGA9 69 443 - -
Cma20g00170 443 Pfam Seed dormancy control 250 324 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00314 Cma-Chr13:3592187 Cma20g00170 Cma-Chr20:819556 2.15E-119 dispersed
Cma20g00170 Cma-Chr20:819556 Cma06g00025 Cma-Chr6:157073 1.21E-119 dispersed
Cma20g00170 Cma-Chr20:819556 Cma18g00660 Cma-Chr18:6016786 1.06E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36967 PF14144 DOG1 4.80E-27 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00170 K14431 - csv:101223216 554.288