Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00178 ATGGAGTCTTCTCCGGACGACATCGCAGACGACCTCCAGAGCCTCAGCTTCAATTCCACCAACACCAACCACAGCATCAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCCTCATCCGTACACATCCCTTCTATTCTCAACAAGCCTCACGCGCCTTCTTCCGACCCTTGCTGGTCTGCCGTTAACCGGATCCGATCCGACTCGTCGTCTCGCCAACTCGCCTTCTCCGACCTCAAGTTCTTCAACCGCCTCGGTTCCGGCGACATTGGCTCCGTCTACCTCGCTGGCCTCAAGTCCACTGGAGCCGATGGATGCCTGTTCGCGGCGAAGGTAATGGATAAGAAGGAACTGGCGAGTCGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGGGAGATTTTGGAGTCTTTAGACCATCCGTTTCTTCCGGCACTCTATGCTAGTATCGACTCGCCTAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGCGGTGACCTTCATGTTCTCCGGCAACGGCAGCCAAACAAACGATTCGATGAACTCGCCGTAAGATTCTATGCATCTGAGATTGTGGTTGCTATCGAGTATCTTCACATGATGGGGATCGTTTACCGTGATCTGAAGCCTGAAAATGTGCTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCAACGGCGACCCCACAGGTTATCAATGCTAAAAATCCGACAAATGGCACCGCCCTGCCAAAGAACTACCAAATTGATGCCCCTCCTTTTGCATCATCCTCCTGCATACTTCCAAACTGTATAGTCCCTGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCTGGTCGCCGCAATGGACCTGAGTTTGTTGCCGAACCGGTCGACGTCCGGTCGATGTCATTTGTTGGCACTCACGAGTACCTGGCACCAGAGATTGTCTCCGGTGAGGGCCATGGAAGCGCAGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTCTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAATATAGTGGCCAGAGCCCTTGAGTTTCCTAAAGAACCGGCAGTGCCAGTGGCGGCAAAGGACCTCATTTCCCAGTTACTGGTCAAAGACCCGGCGAGGCGGCTAGGGTCAACGACAGGGTCGTCGGTGATCAAGCACCATTCATTTTTCCAAGGGGTGAATTGGGCACTATTGAGATGTACTACGCCACCATTTATTCCCCCACCATTTAGTAGAGAAAAAGTTGCATTGGATGAAAGCTGCCCTGTGGCCCCAATCGAGTATTATTAG 1356 52.65 MESSPDDIADDLQSLSFNSTNTNHSISSGSETTLTASSSSVHIPSILNKPHAPSSDPCWSAVNRIRSDSSSRQLAFSDLKFFNRLGSGDIGSVYLAGLKSTGADGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPALYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKNPTNGTALPKNYQIDAPPFASSSCILPNCIVPAVSCFNPKRKRKKKSGRRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPVAAKDLISQLLVKDPARRLGSTTGSSVIKHHSFFQGVNWALLRCTTPPFIPPPFSREKVALDESCPVAPIEYY 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 864044 868031 - CmaCh20G001780.1 Cma20g00178 315992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00178 451 PANTHER FLIPPASE KINASE 1-RELATED 3 451 - -
Cma20g00178 451 PANTHER OS11G0150700 PROTEIN 3 451 - -
Cma20g00178 451 ProSiteProfiles Protein kinase domain profile. 79 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00178 451 Gene3D Transferase(Phosphotransferase) domain 1 308 430 - -
Cma20g00178 451 Gene3D Transferase(Phosphotransferase) domain 1 166 240 - -
Cma20g00178 451 Gene3D Phosphorylase Kinase; domain 1 78 165 - -
Cma20g00178 451 SMART serkin_6 79 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00178 451 Pfam Protein kinase domain 82 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00178 451 Pfam Protein kinase domain 309 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00178 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cma20g00178 451 SUPERFAMILY Protein kinase-like (PK-like) 57 435 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01337 Cma20g00178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00178 Cma-Chr20:864044 Cma03g00597 Cma-Chr3:5305588 1.11E-148 dispersed
Cma20g00178 Cma-Chr20:864044 Cma20g00180 Cma-Chr20:873534 2.63E-137 proximal
Cma02g01337 Cma-Chr2:7835428 Cma20g00178 Cma-Chr20:864044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69367 PF00069 Pkinase 1.60E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00178 K08286 - csv:101207262 850.121