Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00180 ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAATCAACAGAAGAAATTGATTCCGAGAAAGCTGGTACAAGTTACATGCTAGATGTTGGAAAAAGGTTTTCTATAGAGGATGACATTAACCATCTGTTTCAGGCAATTGATATTAGAACCTTACGTAAGAGGGCTGGGCAACAACGTGAAGTTGATAAAGATGCCTTGCGAAAGAGTGCGATGAAAAGACCGGTTAGAGTAGGTTCATCTCACATGGCAGGGATAGGAATTTCTGAACCTGCAAGTTTGAAGCAGGCTTTGAGAGGCTTGTGCATATCTCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTTGGTAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAGAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATCTGGTGTTCCTGTAAATGAAAGCAGAACAAATTTGGTAGAAATTTCCATTGTTTCAGAAAGAATCATGTCAACTTCTCAAAATAAGATGCCTGAGTCGTTACATAAAACTGAGACAGATATATCAAATCAAGGAGCTGAGTCTTCTTCTTTCAAGGATACTGGGGTATCAGAAGAGGTGAGTGTGGATAGAGTGATGTCGAAGGATCTTGTAGTTAATATGGCTACTGAGGTGACAAGTTTAAAGGCAGCTGGTGAAGTAGAAAAACTTAGATCTCCTTCCTTTACTCCTTCTGGTGAGAAGGATCTGGCTGTGAACAGCATGGCTATTTCCTCAACTGAAGATTTAACAAAAGATTCAGTACCGAAGGAGGAGAGAGGTACAATGCGTTGTTTATCTTCTCTATCCAGCTCGGGATCTGTTGTCAAGCTGAACAAATCAGCTTTCAATAATACACGTTTCATCAAACCTATTTTCAGGTCCAAGAGTTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGCGTGTTCGATGGGTGCACGGAAAAGCTTGACACTGATTTGGGTCCCATAGCAGAAAAATCTGAGAACCAGATGCCAGAAAATGCACAGCATCATGAGAGTAAAGAAGAAAATAAAGGTTATTCTATCTCTAGTAGCATAACTTTAGGTACTGAAGTAAATGGAAATGTAGTAAACACAGAATCTAGTAGACCCGGTACATCTCTCAACTGCTGTAACAGGAACAAACCAACTATTATGCCATTCGATGAGAGATCGAGATCGAGAGAAAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTATTGGCGAATGTAGTAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTTAGTGGATCAAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGATTTGAAGTGGAAAGCAATCCTCCACCTTCAGGATCAACATAAATTCTTAGGACTGAGAAATTTCAAGCTGCTAAGGAGACTTGGTCTCGGGGACATTGGGACCGTGTATCTTTCTGAGCTGTGTGGTTCAAGCTGTTTATTTGCTATTAAAGTGATGGACAAGGAGTTCTTGGCAAGCAGGAAAAAAATACTTCGAGCACAAACCGAGAGAGAGATACTGCAAATGCTCGACCATCCATTTCTTCCTACATTATATGCCCATTTTGAGACAGATAAGCACTCATGCTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCATGTGCTGCGACAGAAGCAAACATGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAGTACTTACATATGCTAGGAGTTGTTTATCGGGACCTGAAACCCGAAAATGTTCTGGTCCGAGAAGATGGACACATCATGCTCACAGATTTTGATTTGTCCCTTAGATGTTCTTTTAACCCAACGCTGCTTCAATCATCATCTCCAGTTGTGGAATCCACTAAGAGGACGCTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTCTCATGCTTCACTCCCAAAGTTGTATCTGCTCCATACAAATCCCGGAGAACGAAAACAGATCATAACGGTGGTCTATTACCGCAGCTTATTGTCGAACCAACTGGTGCGCGGTCCAATTCATTTGTAGGAACCCACGAATACCTTGCTCCCGAGATTGTCAAGGGTGATAGCCATGGGAGTGCTGTTGATTGGTGGACTTACGGGATTTTCCTGTTTGAGCTTCTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCCAACATAGTATCCCAACCTCTCAAGTTCCCCGATTGCCCTATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGGCCAAGGAGCCCGAAAACCGATTAGGCTCAACAAAAGGGGCTATCGAGATTAAGCAGCATCCGTTTTTTGAAGGCCTCAACTGGGCTCTGATACGTTGTGCAGCTCCCCCCGAGCTTCCCAAGTTTTTCGACGGTGGAACTGGTGCAATGCCAATGGATTCTGGGGAGAGTACGAAGCGTAGAGATCTCGAGAATATGGAAGCAGATGCAGCAATCTTTGACCTAACTTGA 2577 43.54 MTTLASTSEIVESTEEIDSEKAGTSYMLDVGKRFSIEDDINHLFQAIDIRTLRKRAGQQREVDKDALRKSAMKRPVRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRLVGSPRISEAGTIKRLYRAVVVEANGSGVPVNESRTNLVEISIVSERIMSTSQNKMPESLHKTETDISNQGAESSSFKDTGVSEEVSVDRVMSKDLVVNMATEVTSLKAAGEVEKLRSPSFTPSGEKDLAVNSMAISSTEDLTKDSVPKEERGTMRCLSSLSSSGSVVKLNKSAFNNTRFIKPIFRSKSFVKKKAKLEPNSSPSVFDGCTEKLDTDLGPIAEKSENQMPENAQHHESKEENKGYSISSSITLGTEVNGNVVNTESSRPGTSLNCCNRNKPTIMPFDERSRSREKGMFSQSSKSSIGECSSSPSISGESILSGSSRSGVRPHMSKDLKWKAILHLQDQHKFLGLRNFKLLRRLGLGDIGTVYLSELCGSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQTCKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCSFNPTLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVVSAPYKSRRTKTDHNGGLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDSHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQPLKFPDCPIVSFHARDLIRCLLAKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCAAPPELPKFFDGGTGAMPMDSGESTKRRDLENMEADAAIFDLT 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 873534 878533 + CmaCh20G001800.1 Cma20g00180 315994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00180 858 PANTHER FLIPPASE KINASE 1-RELATED 1 833 - -
Cma20g00180 858 ProSiteProfiles Protein kinase domain profile. 473 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00180 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Cma20g00180 858 Gene3D Phosphorylase Kinase; domain 1 471 552 - -
Cma20g00180 858 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 833 - -
Cma20g00180 858 Pfam Protein kinase domain 702 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00180 858 Pfam Protein kinase domain 474 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00180 858 MobiDBLite consensus disorder prediction 378 395 - -
Cma20g00180 858 MobiDBLite consensus disorder prediction 413 445 - -
Cma20g00180 858 MobiDBLite consensus disorder prediction 378 445 - -
Cma20g00180 858 Gene3D Transferase(Phosphotransferase) domain 1 700 819 - -
Cma20g00180 858 CDD STKc_phototropin_like 473 823 - -
Cma20g00180 858 SUPERFAMILY Protein kinase-like (PK-like) 448 823 IPR011009 -
Cma20g00180 858 MobiDBLite consensus disorder prediction 169 198 - -
Cma20g00180 858 MobiDBLite consensus disorder prediction 341 363 - -
Cma20g00180 858 Gene3D Transferase(Phosphotransferase) domain 1 553 622 - -
Cma20g00180 858 SMART serkin_6 473 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00180 858 MobiDBLite consensus disorder prediction 345 359 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01339 Cma20g00180 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01339 Cma-Chr2:7843244 Cma20g00180 Cma-Chr20:873534 0 dispersed
Cma03g01169 Cma-Chr3:7831679 Cma20g00180 Cma-Chr20:873534 0 dispersed
Cma07g00864 Cma-Chr7:4029515 Cma20g00180 Cma-Chr20:873534 0 dispersed
Cma20g00180 Cma-Chr20:873534 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma20g00178 Cma-Chr20:864044 Cma20g00180 Cma-Chr20:873534 2.63E-137 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69368 PF00069 Pkinase 3.20E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00180 - - cpep:111777395 1597.79