Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00187 ATGGATGAAGGTAAAGATACCGATCATGATCATTATCGCCGGCGACAAGGGAAGCCACTGCGGCCTTTTAACAACATCCCTGACCCTCAAAATCATCACCCAATTTCTCATCCTTCATTTCCTTTTAACAACCCAGGCTCTGTTTCTCATGCTTCCTCTTCTTCTGCAACACCTCTCTTTCCGTTTCCTTTCCAACCATCCCAATTCCCCCATCAATCCAAAACAGAGCTTGTAGAGCCTGTAGCGCCTGTGGTTCATCACCGCCCATCAGTCCGGCCGCAATTGGCGCCGATCGCTTCTACCCAACATGGATTTGGCTTTGGTTACCCACCCTACTTCATGGGGGAGTTTGCATCGTTTCAACAGCAACAACAACAACATCAGCAATTTCTTCAGCAATGGAATGAGTCTCTTAATTTAAACACAAGGGCAGCAGGGATTAGACCTCAAGTGCGGGCTTTAAATACCACGAAGCTATACAGAGGAGTGAGGCAGAGACATTGGGGGAAATGGGTAGCCGAGATTCGTCTTCCTCAAAACAGGAATCGTCTCTGGCTTGGTACATTCGACACTGCAGAAGACGCTGCCTTGGCCTACGATCGGGAGGCTTTCAAGTTGAGAGGAGCGAATGCAAGGCTTAATTTTCCAGAACTATTTCTAAATAAAGATAATAAAGAAGAAGAAGAAGAAGAGGCCTCGCAGGCTCCTCAACAGGATGTTGACAATGACATAGAATTAGAGTCCAATAATGGGGCTGTGACAGAGGACAACGTACAAGAGGCAGAGGGTGTTTCAAACTCACAGGAAATGGTTTGGAGAGAAATAGCAGAGGCTTGGTTAAACGCGATGCCAGCCGGTTGGGGCCCTGGTAGCCCTGTGTGGGACGATTTGGACACCACCAATAATCTGCTGCTGCAGCCACAGCCTTCATATGGCTCTGATCTTCAGAGACCCTCAGTTTCACCTTCTTCCTCATCCTGCCCCATGAAGCCCTTCTTTCAAAAGGATGAAGATTAA 1017 47.79 MDEGKDTDHDHYRRRQGKPLRPFNNIPDPQNHHPISHPSFPFNNPGSVSHASSSSATPLFPFPFQPSQFPHQSKTELVEPVAPVVHHRPSVRPQLAPIASTQHGFGFGYPPYFMGEFASFQQQQQQHQQFLQQWNESLNLNTRAAGIRPQVRALNTTKLYRGVRQRHWGKWVAEIRLPQNRNRLWLGTFDTAEDAALAYDREAFKLRGANARLNFPELFLNKDNKEEEEEEASQAPQQDVDNDIELESNNGAVTEDNVQEAEGVSNSQEMVWREIAEAWLNAMPAGWGPGSPVWDDLDTTNNLLLQPQPSYGSDLQRPSVSPSSSSCPMKPFFQKDED 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 905975 906991 + CmaCh20G001870.1 Cma20g00187 316001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00187 338 MobiDBLite consensus disorder prediction 291 338 - -
Cma20g00187 338 ProSiteProfiles AP2/ERF domain profile. 159 216 IPR001471 GO:0003700|GO:0006355
Cma20g00187 338 MobiDBLite consensus disorder prediction 1 55 - -
Cma20g00187 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 249 335 - -
Cma20g00187 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 20 237 - -
Cma20g00187 338 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Cma20g00187 338 SMART rav1_2 159 222 IPR001471 GO:0003700|GO:0006355
Cma20g00187 338 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Cma20g00187 338 PRINTS Ethylene responsive element binding protein signature 160 171 IPR001471 GO:0003700|GO:0006355
Cma20g00187 338 PRINTS Ethylene responsive element binding protein signature 182 198 IPR001471 GO:0003700|GO:0006355
Cma20g00187 338 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700|GO:0006355
Cma20g00187 338 MobiDBLite consensus disorder prediction 29 55 - -
Cma20g00187 338 MobiDBLite consensus disorder prediction 295 330 - -
Cma20g00187 338 MobiDBLite consensus disorder prediction 1 17 - -
Cma20g00187 338 CDD AP2 158 218 IPR001471 GO:0003700|GO:0006355
Cma20g00187 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 249 335 - -
Cma20g00187 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 20 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00982 Cma-Chr19:8562446 Cma20g00187 Cma-Chr20:905975 7.97E-66 wgd
Cma02g00110 Cma-Chr2:555860 Cma20g00187 Cma-Chr20:905975 5.54E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36968 PF00847 AP2 1.10E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00187 - - cpep:111795746 389.037