Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00193 ATGCATCTCCTCCTCCACTGCCGTGGTTTTCGGCTCGTTAGAGCTTTGTTCTGTGCTGCGGCTGTGCTTGAGTGGTTCACGGCGACGGCTCAGCTCCAACACCATGTGGCGGATCTACATTGGCTTCCAGCCACCGCCACGTGGTACGGAAGTCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTGAAGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTCTGTTCAGAAATGGCGAAGGTTGTGGAGCTTGTTACAAAGTAAAGTGTTTAGACAACAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAATGCCCCGGTGGGTATTGTTCCAATGGCAACACCCACTTCGATCTGAGCGGCGCCGCCTTCGGCCGCATGGCCATCACCGGCGAAGGTGGGCAACTCAGGAACCGAGGCGAAATCCCAGTTATTTACCGACGGACGCCGTGTAAGTACCCAGGCAAGCACATTGCGTTCCATGTCAATGAAGGGTCGACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGACGGCGATGGCGACATCGGCGCAATGCAAATCAAAGAAGCAGGGTCGGGGGAGTGGGTGGATATGAACCATCTGTGGGGGGCAAATTGGTGCATCATTGGAGGGCCTTTAAAGGGGCCATTCTCAGTGAGATTAACAACGTTGTCCACAGGAAGAAGCCTCTCAGCAAGGGATATAATCCCAAGGAATTGGTCTCCCAAAGCCACTTACACTTCCCGACTTAATTTCTTCTCTTAA 810 52.96 MHLLLHCRGFRLVRALFCAAAVLEWFTATAQLQHHVADLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDNNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGEIPVIYRRTPCKYPGKHIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKEAGSGEWVDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 916333 918243 - CmaCh20G001930.1 Cma20g00193 316007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00193 269 Gene3D - 166 268 IPR036749 -
Cma20g00193 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Cma20g00193 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Cma20g00193 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Cma20g00193 269 PANTHER EXPANSIN-LIKE PROTEIN B1 18 268 - -
Cma20g00193 269 SMART dpbb_1 77 159 IPR007112 -
Cma20g00193 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Cma20g00193 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Cma20g00193 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Cma20g00193 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Cma20g00193 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Cma20g00193 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Cma20g00193 269 SUPERFAMILY Barwin-like endoglucanases 38 168 IPR036908 -
Cma20g00193 269 PANTHER EXPANSIN-B3 18 268 - -
Cma20g00193 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Cma20g00193 269 Pfam Lytic transglycolase 79 158 IPR009009 -
Cma20g00193 269 Gene3D - 26 165 IPR036908 -
Cma20g00193 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Cma20g00193 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Cma20g00193 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Cma20g00193 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Cma20g00193 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Cma20g00193 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01872 Cma20g00193 CCT
Cma02g00104 Cma20g00193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00956 Cma-Chr6:6481885 Cma20g00193 Cma-Chr20:916333 4.66E-78 dispersed
Cma14g02155 Cma-Chr14:14770870 Cma20g00193 Cma-Chr20:916333 1.17E-74 dispersed
Cma20g00193 Cma-Chr20:916333 Cma01g00479 Cma-Chr1:2422883 1.14E-37 dispersed
Cma11g01872 Cma-Chr11:12428645 Cma20g00193 Cma-Chr20:916333 1.23E-145 wgd
Cma02g00104 Cma-Chr2:537137 Cma20g00193 Cma-Chr20:916333 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00193 K20628 - csv:101202998 510.375