Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00202 ATGGGTTGCATCTGTTCTAAGGTTTTACCGGATGAGTGTAGTGAACATGAACATGATAGCTCCAATAGGGCATATTCCTCCAGAAAACACCTCTCTGAATTGAAAATATCAAGAGCTGGCTTTCCCAAATCAGAGAAGATTTGGGAAAAAGATAGACTAGATTGTGGCGATGTTTCGGTTATGTTGTTCGATACGAAGGCGAATGGTCCTCTGCGCTCGCACGGTGAGCTTCCTAATGAGAGGAAGAAGGCAGACGTCCCTGATATCACCATTGTCACTCATCCATGTATGGGAAAGATTCCGAATGTTACCGAAGCCGAGCAGGTTGCTGCTGGTTGGCCGAGTTGGCTGGCTAAGATGGCTGGTGAGGCCATCAAAGGGTGGCTGCCCAAACATGCCAATAACTTCATCAAGTTAGAAAAGATTGGCCAGGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATCATTCAGGATAAAGCTGTGGCCTTGAAACGGATCAGGTTCGACAATCAAGATGCCGAGAGTATCGCGTTCATGGCTAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATCGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTCACATGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCATCTCGGCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGCGGGCTTGCTCACTGTCACAGTAATGGGGTTCTGCATAGAGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCGTTTTGAAGATAGCAGATTTTGGGTTGGCTGTTTTCTATGATTCACAGTCGACGGTTCCCATGACGAGTCGTGTAATAACTCTCTGGTATCGACCACCGGAACTTTTACTTGGAGCATCTCAATATGGAGCTGAAGTTGACTTATGGAGTGCTGGTTGCATTCTAGGAGAGTTATATGCCGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTACACAAAATATTCAAGCTATGTGGTTCCCCCTCCAAGGAATATTGGAGAAACTTGCATTTGAAGCATTCAACAAGCATGAGGCCTCCGCAGACGTACGAACGATGTCTTCGAGAAAGATATGACGACATTCCTCATGCTGCTATTGAGCTCATGGACAATTTGCTGTCTATAGATCCTGCAGAGCGAGGAACTGCAGCTTCCGCGCTCGACAGTGAGTTCTTTAGCACAAGGCCCTTGCCATGCAATCCTTCAAGTTTGCCAAAGTACCCTCCTAGCAAAGAAATCAATTCAAAACTGCGGGAAGAGGAAGCAAGAAGGCAACGAGGAGTAGGTGGCGGGAGAAGCCGAGCAGTCGACGCCGAACTAAAAGGACTGAAGCAATCTCGGGTAGTTCCTGCTGCAAAGGCCAACTCTGAGTTGGTTATTTCACTTCTGAGAAAACAAAGTTTTTTGAGCTCGAAGTATCGGAATGAGAAGTGTTCTTACGGATTGGTGTCGAAGAGAACCTCAAGTTCAGGACCTATAATAACTCAGAGACCAGGATTTACAAACTCGAAAACGGTACCGAAACACGTTTCAGCAATTCCAAGGGAGTGTTTAACATCATCTGGGCCAATTGAGTTTGTTTCTTACAAACATGTCCGAGAAAGAAATGGAGTTTCAAGGCCAGAATCAACGAGCCAAGACAAAACTCTAAGAGTGTTGGCTTCCTACAAGAAAAGGGAAGAAAAAAGAAACATAGAAGCCAAGCCACCACCAGTTCTGTTCTTTGAGCTAATGTACATAAGCGAGCTCAATGTTCTTTCTTGTTTCTGGGCTGCAATTATGGGTTGCCAATGTTCCAAGCCATCTGTTCATGAAGATGAACAGAGCAGAGCCTCTGAGAAATTGCCTTCACTAAAGGCTTCAGGGGTTAATTTTTCAAGGAAAGAGGAGGATGTGCAATTCAATTCCGTGAAGAGGGACCAAGGTGTTCGACTAAATGCCTCACAGAGAGCTGATAGTATTCGATCAAAGGTGAAACCAGAAGGTGGTGACTTGAAGGTTGTTTACTTAGATAAGAGGGTCAACGGCTCAAACAGGGTACATGATGATCAAATTGAGAAAAAGAAGAGGGAGAGGTTGGAAGCAGCCATTTCTGCTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCTATGGAAGCTGAGCAAGTTGCAGCTGGTTGGCCTAGCTGGCTTTCCTCTGTGGCTGGTGAAGCGCTCGAGGGATGGCTGCCACGAGAAGCCGAAACATTCGAGAAACTAGACAAGATAGGACAAGGAACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCACGGTAAACTAGTCGCTCTAAAACGAGTTCGATTCGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGACTTGATCATCCAAACGTTATAAAATTGGAAGGCTTGATTACGTCTCCGCGATCATGTAGCTTGTACCTCATTTTTGAGTATATGGAGCATGATCTTACAGGACTCGCATCTCGGCCCGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTGCCACAGTCATGGTGTCCTCCACCGTGATATAAAGGGTTCGAATCTCCTAATCGATGCCAATGGTATCTTGAAGATTGCAGATTTTGGACTAGCAAGCCATTTTGACCCTCATAATCATGTTCCCTTAACAAGTCGCGTAGTGACTCTATGGTACCGACCGCCCGAACTTCTTCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTGTGGAGTACTGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCCATCTTACCTGGAAAAACAGAGGTCGAACAGTTGCATAAGATCTTTAAACTTTGTGGGTCGCCACCCGAGAATTATTGGAGGAAATTACAGTTACCTCATTCAACTGGATTCAAGACGGCTCAGCCATACCGACGTTGTGTCGTGGAAATGCTCAAGGATTTCCCATCTTCTGCGGTGGCTCTCGTGGATAAGTTGCTATCTATTGATCCTGCTCATCGAGGAACTGCAGCTGCTGCCTTAAAGAGCGAGTTTTTTACGACTAAACCGCTTGCTTGCGACCCTTCGAGTTTGCCCAAATATCCTCCGAGCAAAGAGATCGATGCAAAATTCAACAGCTGCAGGAGGCAATCACGAGTTGAGGGCAAGGACCCAAAATATTATGCGGAAGGGAGGCGATCTAAGGAAGCTAACATTAATCTTTCTCTTAATGCCAAGGATGAAGCAAACATATTAATGCAGAAAAGGCAAGGTCATTCAAGTTTCAAAGGCGGAATCGGAGTGCTCAATCCGCATGGGGACGAAACAGTTTCTGGGTTTTGTATTGCTCCTCCCAGACAAAACCAATCTGTCACAGAAATTTGTTCAGATACAGGCAGGATTTCACATTCAGGACCGCTAATTAGCAGACCAGATTGGATGAAATCAAGAAAGCAACTTGATGATCATTCAATGTTGCTTGATGGATCCAATCTCTCAGTGTTATCCCGTTTAGTAGCGACGAGGTCTAATACATCTGAACATCCCTACGATAGACCGGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTTGTTAGGGAGTCTGAGGCAACAAGAAAGCAGGACCGAGTATTTTATGCACATCGAGGTGCAGATTCATACCGGATAGAGAATGAAAAGGCTTGTGCTAAAGAACAGTCCCCGTTTGCTTATGGGACAGACATGAACAAGCTTTATACTTCTGGTCCACTTCTTGGTCCATCAAACAACTTAGATAAAATTCTGAAAGAGAAAGACCGTCAGATTCAAGAATTTGCTCGACAAGCACGACACGGTAGAGCTGCTAACATTCAGTCGAAGGGTTCGAGAGCAACAACTGGAAAACATCTCATGTTGAGCCATGGAGTATGA 4023 44.94 MGCICSKVLPDECSEHEHDSSNRAYSSRKHLSELKISRAGFPKSEKIWEKDRLDCGDVSVMLFDTKANGPLRSHGELPNERKKADVPDITIVTHPCMGKIPNVTEAEQVAAGWPSWLAKMAGEAIKGWLPKHANNFIKLEKIGQGTYSSVYKARDIIQDKAVALKRIRFDNQDAESIAFMAREILVLRRLDHPNIVKLEGLITSQTSCHMYLVFEYMEHDLTGLASRPGTSFTEPQMKCYMKQLLSGLAHCHSNGVLHRDIKGSNLLIDNNGVLKIADFGLAVFYDSQSTVPMTSRVITLWYRPPELLLGASQYGAEVDLWSAGCILGELYAGKPILPGKTEVEQLHKIFKLCGSPSKEYWRNLHLKHSTSMRPPQTYERCLRERYDDIPHAAIELMDNLLSIDPAERGTAASALDSEFFSTRPLPCNPSSLPKYPPSKEINSKLREEEARRQRGVGGGRSRAVDAELKGLKQSRVVPAAKANSELVISLLRKQSFLSSKYRNEKCSYGLVSKRTSSSGPIITQRPGFTNSKTVPKHVSAIPRECLTSSGPIEFVSYKHVRERNGVSRPESTSQDKTLRVLASYKKREEKRNIEAKPPPVLFFELMYISELNVLSCFWAAIMGCQCSKPSVHEDEQSRASEKLPSLKASGVNFSRKEEDVQFNSVKRDQGVRLNASQRADSIRSKVKPEGGDLKVVYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPREAETFEKLDKIGQGTYSSVYKARDIIHGKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLIFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSHGVLHRDIKGSNLLIDANGILKIADFGLASHFDPHNHVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWRKLQLPHSTGFKTAQPYRRCVVEMLKDFPSSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACDPSSLPKYPPSKEIDAKFNSCRRQSRVEGKDPKYYAEGRRSKEANINLSLNAKDEANILMQKRQGHSSFKGGIGVLNPHGDETVSGFCIAPPRQNQSVTEICSDTGRISHSGPLISRPDWMKSRKQLDDHSMLLDGSNLSVLSRLVATRSNTSEHPYDRPGPSRSEVGRLPDFVRESEATRKQDRVFYAHRGADSYRIENEKACAKEQSPFAYGTDMNKLYTSGPLLGPSNNLDKILKEKDRQIQEFARQARHGRAANIQSKGSRATTGKHLMLSHGV 1340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 955550 964237 + CmaCh20G002020.1 Cma20g00202 316016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00202 1340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Cma20g00202 1340 CDD STKc_CDK9_like 136 420 - -
Cma20g00202 1340 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Cma20g00202 1340 Gene3D Transferase(Phosphotransferase) domain 1 854 1093 - -
Cma20g00202 1340 Gene3D Transferase(Phosphotransferase) domain 1 219 457 - -
Cma20g00202 1340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Cma20g00202 1340 Pfam Protein kinase domain 771 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00202 1340 Pfam Protein kinase domain 137 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00202 1340 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Cma20g00202 1340 Gene3D Phosphorylase Kinase; domain 1 758 853 - -
Cma20g00202 1340 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00202 1340 SMART serkin_6 771 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00202 1340 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524
Cma20g00202 1340 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00202 1340 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Cma20g00202 1340 ProSiteProfiles Protein kinase domain profile. 771 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00202 1340 MobiDBLite consensus disorder prediction 1317 1340 - -
Cma20g00202 1340 CDD STKc_CDK9_like 771 1055 - -
Cma20g00202 1340 PANTHER CELL DIVISION PROTEIN KINASE 708 1308 - -
Cma20g00202 1340 SUPERFAMILY Protein kinase-like (PK-like) 767 1061 IPR011009 -
Cma20g00202 1340 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 708 1308 - -
Cma20g00202 1340 PANTHER CELL DIVISION PROTEIN KINASE 84 507 - -
Cma20g00202 1340 MobiDBLite consensus disorder prediction 1212 1233 - -
Cma20g00202 1340 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 84 507 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00989 Cma20g00202 CCT
Cma11g01881 Cma20g00202 CCT
Cma11g01881 Cma20g00202 ECH
Cma19g00989 Cma20g00202 ECH
Cma02g00097 Cma20g00202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00549 Cma-Chr4:2787202 Cma20g00202 Cma-Chr20:955550 0 dispersed
Cma16g00396 Cma-Chr16:1972196 Cma20g00202 Cma-Chr20:955550 0 dispersed
Cma20g00202 Cma-Chr20:955550 Cma06g01464 Cma-Chr6:9351664 0 dispersed
Cma02g00097 Cma-Chr2:498270 Cma20g00202 Cma-Chr20:955550 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69369 PF00069 Pkinase 1.60E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00202 - - csv:101207826 1285.78