Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00216 ATGGAGGATCAGCGAGACGATGTTGCACCATCAGAGCAAGGGACTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGTGGAGAAATTTGGATCTGTTTCTTTGGGTCCTCGGGAAGACATTGTGAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAGAGAGCATCTCAAATTCTCTGGCGCACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTATGTTATTCCGGATAAGAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGTTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAACGATGTTATTCTTGTGGAGCCAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTCGACACTGATTAAAGGCGTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTGTAGAAGAAGCCAACCACTTGTTTGAGGATAGAGGCATTCAGTTGCTCGGTCAAATAAAATTTGGTTCTTGCCGTCCTAGAGCTATCTTATTTAAGGTTCTGGCGGACACTGTAGGGCTTGAAAGTCGTCTCATGATGGGCTTGCCAAATGAGGGGGCTAATGGGTGCGTGGACTCATACAAGCACATGTCGGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTTCCTGGCCAGTTGTTACCTCAGTCAACTAAGGCAATTTTTATGACACATATTTCCGCTGCTGGGGAAAGCGATTCTGCAGAAAACGACTCATGTGATTCACCACTAGAACCTAACAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCTTGACAGTGGTGAAAAAGATGAGAGCCTTCAATTCCACAAAAAAATTGAAGCAGCTTCAAATGCATATGCTCCTTCATTGCGCAGTATGATGTTGCGATCAAGTACAACACTCGACAGGAAAATGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGAAGTTGTCGGAGAAAAGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGAGGCCGGTCCATGCTTAGTGGGGACAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACTTCCACTTCCACTTCGACTTCAAATTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGAACAAGTAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAATAGTTCAGATGTTCGGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCATTACCGTCATCGCCACATGATTATAGGGGTCAAACCTCTGATAGAAGTGGGCATTCAGCATGGACTAAAGTTCTTGAATCATTCTCTTTGAACGACAAACCCCTATTACCTTACCCCGAGTGGAATATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACGGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAGGACTTCTGTAATGAGATATTAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTATTTCTGGGCGCATGTACAGAACCGCCACGCTTGTCAATGATCACCGAATACATGGAGCTGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGGAGGAGACTGAAAATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCACCGGGACCTGAAAAGTGCAAATTGCCTAGTCAACAAGCATTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAACCCTTCACTGAAAAGTGCGATATTTTCAGCCTGGGGGTCATCATGTGGGAGCTTTGCACGCTAAGTAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTAGAGATTCCTGAAGGGCCGCTTGGCAGGCTCATATCAGATTGTTGGGCAGAACCGAATGAGCGGCCAAGCTGCGAAGAGATTGTCACCCGCTTGCTCGACTGCGAAAAACATGGTAGAGTTGCAACTTTTGATGTCCTCGGCTCCTATTCTGAACTCTTGTTGATTTTTCCAACCGTTCTATGA 2457 44.2 MEDQRDDVAPSEQGTSNASWWSSDFVEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWRTGMLCEPIPDGFYYVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVEPEKDKKLSMLKQLISTLIKGVSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEEANHLFEDRGIQLLGQIKFGSCRPRAILFKVLADTVGLESRLMMGLPNEGANGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPQSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDLDSGEKDESLQFHKKIEAASNAYAPSLRSMMLRSSTTLDRKMSLSHSEPNIANAFWRSCRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSTSTSTSNSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLREQVDDRSFSHPSNERNNSSDVRRNDQVGSQRAISLPSSPHDYRGQTSDRSGHSAWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEILILSRLRHPNVILFLGACTEPPRLSMITEYMELGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEIVTRLLDCEKHGRVATFDVLGSYSELLLIFPTVL 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1031349 1039177 + CmaCh20G002160.1 Cma20g00216 316030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00216 818 MobiDBLite consensus disorder prediction 384 401 - -
Cma20g00216 818 CDD STKc_MAP3K-like 547 789 - -
Cma20g00216 818 ProSitePatterns Protein kinases ATP-binding region signature. 547 568 IPR017441 GO:0005524
Cma20g00216 818 Gene3D Phosphorylase Kinase; domain 1 534 619 - -
Cma20g00216 818 Gene3D Transferase(Phosphotransferase) domain 1 620 803 - -
Cma20g00216 818 Pfam Ethylene-responsive protein kinase Le-CTR1 59 254 - -
Cma20g00216 818 SMART serkin_6 541 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00216 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Cma20g00216 818 MobiDBLite consensus disorder prediction 456 508 - -
Cma20g00216 818 MobiDBLite consensus disorder prediction 402 421 - -
Cma20g00216 818 MobiDBLite consensus disorder prediction 481 508 - -
Cma20g00216 818 MobiDBLite consensus disorder prediction 456 480 - -
Cma20g00216 818 ProSiteProfiles Protein kinase domain profile. 541 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00216 818 SUPERFAMILY Protein kinase-like (PK-like) 514 788 IPR011009 -
Cma20g00216 818 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 29 794 - -
Cma20g00216 818 MobiDBLite consensus disorder prediction 365 431 - -
Cma20g00216 818 Pfam Protein tyrosine and serine/threonine kinase 542 789 IPR001245 GO:0004672|GO:0006468
Cma20g00216 818 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 29 794 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00216 Cma-Chr20:1031349 Cma09g00335 Cma-Chr9:1377586 1.09E-79 dispersed
Cma02g00083 Cma-Chr2:401409 Cma20g00216 Cma-Chr20:1031349 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69371 PF07714 PK_Tyr_Ser-Thr 1.50E-58 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00216 - - csv:101220859 1436.78