Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00235 | ATGAAATTCGAAGAGCAGAACCTGAAGCATCAGTCTGAACAGAGGTGCAGGAATATTGAGTTCGATACAATCGATCACCATCGCAGTATTTCGTCGCTGGTTGAATGCGAAGACAGCGAGAGGGATGGTGACGGCCTCTATATCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAGCGGGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCATTCGTGAACATTCCGGATGATATGATTCGTGAAGCACTAAAAGTTGTCCTTGACGATAGGAATCACCCAGTTCTCATACATTGCAAAAGAGGAAAGCATCGAACAGGTTGTCTTGTGGGATGCCTTAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTATTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAGCTGTTTGATATCTCTGACTTTAAGCATCATCCCATGTTATTCTCATGCTCAAAGAGGTGA | 630 | 44.6 | MKFEEQNLKHQSEQRCRNIEFDTIDHHRSISSLVECEDSERDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSSGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDFKHHPMLFSCSKR | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1119634 | 1122147 | - | CmaCh20G002350.1 | Cma20g00235 | 316049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00235 | 209 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 115 | 155 | IPR000387 | GO:0016311|GO:0016791 | |
Cma20g00235 | 209 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 48 | 194 | IPR029021 | - | |
Cma20g00235 | 209 | Pfam | Tyrosine phosphatase family | 47 | 200 | IPR004861 | - | |
Cma20g00235 | 209 | Gene3D | Protein tyrosine phosphatase superfamily | 47 | 196 | IPR029021 | - | |
Cma20g00235 | 209 | CDD | PFA-DSP_Siw14 | 46 | 193 | - | - | |
Cma20g00235 | 209 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 52 | 203 | IPR020422 | GO:0006470|GO:0008138 | |
Cma20g00235 | 209 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE | 13 | 207 | - | - | |
Cma20g00235 | 209 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE DSP1 | 13 | 207 | - | - | |
Cma20g00235 | 209 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 142 | 152 | IPR016130 | GO:0016311|GO:0016791 | |
Cma20g00235 | 209 | PRINTS | Plant and fungal dual specificity phosphatase signature | 47 | 64 | IPR020428 | GO:0016791 | |
Cma20g00235 | 209 | PRINTS | Plant and fungal dual specificity phosphatase signature | 84 | 97 | IPR020428 | GO:0016791 | |
Cma20g00235 | 209 | PRINTS | Plant and fungal dual specificity phosphatase signature | 103 | 117 | IPR020428 | GO:0016791 | |
Cma20g00235 | 209 | PRINTS | Plant and fungal dual specificity phosphatase signature | 120 | 134 | IPR020428 | GO:0016791 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00065 | Cma20g00235 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00831 | Cma-Chr10:3888135 | Cma20g00235 | Cma-Chr20:1119634 | 4.21E-74 | dispersed | |
Cma11g00940 | Cma-Chr11:4935931 | Cma20g00235 | Cma-Chr20:1119634 | 2.00E-78 | dispersed | |
Cma11g01936 | Cma-Chr11:12737190 | Cma20g00235 | Cma-Chr20:1119634 | 2.08E-104 | wgd | |
Cma19g01048 | Cma-Chr19:8861806 | Cma20g00235 | Cma-Chr20:1119634 | 8.82E-85 | wgd | |
Cma02g00065 | Cma-Chr2:304907 | Cma20g00235 | Cma-Chr20:1119634 | 2.05E-136 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00235 | K18045 | - | csv:101222170 | 365.54 |