Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00235 ATGAAATTCGAAGAGCAGAACCTGAAGCATCAGTCTGAACAGAGGTGCAGGAATATTGAGTTCGATACAATCGATCACCATCGCAGTATTTCGTCGCTGGTTGAATGCGAAGACAGCGAGAGGGATGGTGACGGCCTCTATATCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAGCGGGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCATTCGTGAACATTCCGGATGATATGATTCGTGAAGCACTAAAAGTTGTCCTTGACGATAGGAATCACCCAGTTCTCATACATTGCAAAAGAGGAAAGCATCGAACAGGTTGTCTTGTGGGATGCCTTAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTATTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAGCTGTTTGATATCTCTGACTTTAAGCATCATCCCATGTTATTCTCATGCTCAAAGAGGTGA 630 44.6 MKFEEQNLKHQSEQRCRNIEFDTIDHHRSISSLVECEDSERDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSSGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDFKHHPMLFSCSKR 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1119634 1122147 - CmaCh20G002350.1 Cma20g00235 316049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00235 209 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 115 155 IPR000387 GO:0016311|GO:0016791
Cma20g00235 209 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 194 IPR029021 -
Cma20g00235 209 Pfam Tyrosine phosphatase family 47 200 IPR004861 -
Cma20g00235 209 Gene3D Protein tyrosine phosphatase superfamily 47 196 IPR029021 -
Cma20g00235 209 CDD PFA-DSP_Siw14 46 193 - -
Cma20g00235 209 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 203 IPR020422 GO:0006470|GO:0008138
Cma20g00235 209 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 207 - -
Cma20g00235 209 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 13 207 - -
Cma20g00235 209 ProSitePatterns Tyrosine specific protein phosphatases active site. 142 152 IPR016130 GO:0016311|GO:0016791
Cma20g00235 209 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791
Cma20g00235 209 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791
Cma20g00235 209 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791
Cma20g00235 209 PRINTS Plant and fungal dual specificity phosphatase signature 120 134 IPR020428 GO:0016791
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00065 Cma20g00235 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00831 Cma-Chr10:3888135 Cma20g00235 Cma-Chr20:1119634 4.21E-74 dispersed
Cma11g00940 Cma-Chr11:4935931 Cma20g00235 Cma-Chr20:1119634 2.00E-78 dispersed
Cma11g01936 Cma-Chr11:12737190 Cma20g00235 Cma-Chr20:1119634 2.08E-104 wgd
Cma19g01048 Cma-Chr19:8861806 Cma20g00235 Cma-Chr20:1119634 8.82E-85 wgd
Cma02g00065 Cma-Chr2:304907 Cma20g00235 Cma-Chr20:1119634 2.05E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00235 K18045 - csv:101222170 365.54