Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00237 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGAGACGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGATCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTTCGTTGCTCAGGGTGCTATGTATAATGGGGAACTTCCTGAAAGAATTGGGCAGCCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCACCATCCAAGAGATAGACGTGGAGCTGGGCCTGTTAGATTTAATATTTTAGGCCTTCCCATGCGACAGGAAGAAAAGTCATGCCCTTACTATTTGCGAACTGGGTCGTGTAAATTCGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCCCCAGTTGGAAATATGTTACATCCCGCTCGACCTGGTGCTTTGGGCTCTGCAGGCACTCCATTCATGCCTGCATCAGGTGTGCCATATACTGGTGCAGTTCCTGCATGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGTGTACAGGGCCAACAATCTTTTGTGCCTGTCTTGGTTTCTCCATCACAAGGTGCCATAACTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTACAATTCTATCAATTTTGAAGAGCCGTATTCTAATGGGCAGTTGGCCTCGTCAACTGCAATTCCAACGCTACCTGATCGACCCGATCAACCAGAATGTCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAATTCCATCATCCGAAACAAAGAATTGCACAATCAGCAACAAATCCGCTTGGGCTTCCTTCAAGACCCGGACAAGCTGTATGTTCATACTACAATATGTATGGTCTCTGCAAGTATGGCCCAAGCTGTAAATTTGATCACCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTCATGAAGTATCCAAGCAACAACTTCACGATGTCCTCTCATGAGGCCCTGCCCCAGACGGTATCTAAATCTTCTGAATGGGTTCAGAAAGCCGATCCTTCGAACAACAAACGTCGAACTACGAATTCAAAAGTCGTAGTCGACAGCACAGCTGAAGAGGCAACCACCGTTTCATGCTCATTACCAGGTGGTTCCGAAACTTTACAAGATCAATCTGGTTGA 1311 45.31 MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVFVAQGAMYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVRFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLHPARPGALGSAGTPFMPASGVPYTGAVPAWSLPRVQYMPGPCVQGQQSFVPVLVSPSQGAITAQDWNTYVGNVSPVLPNLGYNSINFEEPYSNGQLASSTAIPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNPLGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFMKYPSNNFTMSSHEALPQTVSKSSEWVQKADPSNNKRRTTNSKVVVDSTAEEATTVSCSLPGGSETLQDQSG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1145042 1149377 + CmaCh20G002370.1 Cma20g00237 316051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00237 436 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cma20g00237 436 SUPERFAMILY CCCH zinc finger 322 347 IPR036855 GO:0046872
Cma20g00237 436 Gene3D - 120 169 - -
Cma20g00237 436 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cma20g00237 436 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cma20g00237 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cma20g00237 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cma20g00237 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cma20g00237 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cma20g00237 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cma20g00237 436 PANTHER PROTEIN PHOSPHATASE RELATED 7 410 - -
Cma20g00237 436 Gene3D - 45 119 - -
Cma20g00237 436 Gene3D - 275 352 - -
Cma20g00237 436 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cma20g00237 436 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872
Cma20g00237 436 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 7 410 - -
Cma20g00237 436 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Cma20g00237 436 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Cma20g00237 436 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cma20g00237 436 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cma20g00237 436 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cma20g00237 436 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cma20g00237 436 MobiDBLite consensus disorder prediction 383 436 - -
Cma20g00237 436 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cma20g00237 436 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cma20g00237 436 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00061 Cma20g00237 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00208 Cma-Chr18:1138585 Cma20g00237 Cma-Chr20:1145042 2.04E-11 dispersed
Cma19g01123 Cma-Chr19:9220179 Cma20g00237 Cma-Chr20:1145042 9.09E-12 dispersed
Cma20g00237 Cma-Chr20:1145042 Cma13g00777 Cma-Chr13:6687078 4.68E-13 dispersed
Cma02g00061 Cma-Chr2:292949 Cma20g00237 Cma-Chr20:1145042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36972 PF00642 zf-CCCH 5.00E-08 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00237 - - cpep:111777449 919.072