Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00238 ATGCGGCGAGGCAGACCCTCAGATCCATTCACAGCTACAGAACTACCAAAATTGACAGTTCACCCTGAAAATCCTGTCAAAGAGATACGATACAGAGGCGTTCGGAAGCGTCCTTGGGGCAGATACGCCGCTGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCAGCTGAAGAGGCTGCTCGGGCCTACGATAATGCTGCTCGGACCCTCCGTGGAGCCAAGGCCAAAACTAACTTCCCTCTACATCCATCCACGATTTCCATTCAACAACAAATTCCGTTCTACCAATCGCCGCCGGATTTGCACGATTCGAACGGTTATGGTGCCAAGATTGAGTGTGTTCAGGCTAATAGGCCTACGTCGAGCAGTTTGAGTTCCACCGTGGAGTCGTTTAGTGGACCGCGGATTTCTAACCCTTTGTCGTCGCTGTCTATGGTTCGCCGGAGGCCGGTACAGCCAGTTTCGCCGGACGACTGTCATAGCGACTGTGATTCGTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTGCTTGCTTCTTTCCGTCGAGCCTTGCCCTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACAGGTGACGATCTTCAAGCTACTGCTTTATGCCTCTGA 660 51.82 MRRGRPSDPFTATELPKLTVHPENPVKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDNAARTLRGAKAKTNFPLHPSTISIQQQIPFYQSPPDLHDSNGYGAKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1154440 1155099 + CmaCh20G002380.1 Cma20g00238 316052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00238 219 Coils Coil 63 83 - -
Cma20g00238 219 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Cma20g00238 219 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Cma20g00238 219 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Cma20g00238 219 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Cma20g00238 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 25 194 - -
Cma20g00238 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 194 - -
Cma20g00238 219 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Cma20g00238 219 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Cma20g00238 219 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Cma20g00238 219 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00998 Cma20g00238 CCT
Cma11g01910 Cma20g00238 CCT
Cma11g01910 Cma20g00238 ECH
Cma19g00998 Cma20g00238 ECH
Cma02g00060 Cma20g00238 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00870 Cma-Chr6:4979860 Cma20g00238 Cma-Chr20:1154440 4.36E-46 dispersed
Cma11g01910 Cma-Chr11:12628044 Cma20g00238 Cma-Chr20:1154440 7.29E-34 dispersed
Cma16g00908 Cma-Chr16:6781618 Cma20g00238 Cma-Chr20:1154440 1.05E-48 dispersed
Cma18g00386 Cma-Chr18:2109848 Cma20g00238 Cma-Chr20:1154440 2.01E-32 dispersed
Cma19g00998 Cma-Chr19:8657974 Cma20g00238 Cma-Chr20:1154440 1.92E-33 dispersed
Cma11g01938 Cma-Chr11:12753400 Cma20g00238 Cma-Chr20:1154440 1.11E-76 wgd
Cma19g01051 Cma-Chr19:8879470 Cma20g00238 Cma-Chr20:1154440 1.20E-76 wgd
Cma02g00060 Cma-Chr2:289320 Cma20g00238 Cma-Chr20:1154440 4.95E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36973 PF00847 AP2 4.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00238 K09286 - csv:101221703 400.593