Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00249 ATGGATGGTAGTGTACGAGCTCGTTTCCCACTCGGAAAACAGTCATCGCTCAAGCCGGAACGTGAAGATTCGGCTGTGGTTACCGATGAGCTTGATGATTCGATCGTGATTGAACCTGGGATTAAGCTCATGTATCTGGCGAATGATGGCGATTCGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTAGTTGTCAGGGCAGGCTGGACGTCGTTGAGTTGCTACTCGAACGTGGTGCAGATGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATTTATTACAAGAATCATGATGTGATCAAACTCTTAGAAAAACATGGTGCAAAGCTACCGATGGCTCCAATGGTAGTGCAAAATGCTCTTGAAGTTCCGGAATATGAGATCGATCCAAATGAACTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCTGCAGTGCTTCTTGGCGTGGAATTGAAGTTGCCGTGAAGACACTAGGCAAGGATGTTTTCTCCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTACAGAAGATACGGCATCCTAATGTTGTGCAATTCCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGGAGTGTAAAGGTTCCTTGAAGCTACCAACAGTTGTAAAGTTTGCTCTTGACATTGCAAGGTCAAACAACAGAAACATACTGCGGGATGATTCTGGACACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCTAATAGAGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGAGACTTCATGGAAATATGCTGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAAAGTGGATGTGTTTTCATTTGCTTTGATATTGCAAGAGATGATAGAAGGCAATCCACCTTTTTCAACAAAGCCAGAAAATGAAGTACCCAAAGCTTATGTAGCTAATGAACGGCCACCATTTACGGCTCCACCTAAGCGTTATCGGCATGGAATACAGGAACTAATCCAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATAATCGAAAGGTTGGAGGATATTAACACTCAACTTATGCAAACACGAAGCTTGAAGGTGAATCCATTCTGCAATTGTTTCCGGAACCTGAAAGCCTTATTTACAAGTGAAAGGACTAATCCAGGCAGCAGGTCTTCTTACTCGGAAGCCAAATGA 1335 43.9 MDGSVRARFPLGKQSSLKPEREDSAVVTDELDDSIVIEPGIKLMYLANDGDSDGIRELLDSGTDVNFHDTDGRTSLHVASCQGRLDVVELLLERGADVDVQDRWGSTPLADAIYYKNHDVIKLLEKHGAKLPMAPMVVQNALEVPEYEIDPNELDFSKSVNITKGTFCSASWRGIEVAVKTLGKDVFSDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLECKGSLKLPTVVKFALDIARSNNRNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQETSWKYAAPEVYKNEEYDTKVDVFSFALILQEMIEGNPPFSTKPENEVPKAYVANERPPFTAPPKRYRHGIQELIQECWDEKPHKRPTFRQIIERLEDINTQLMQTRSLKVNPFCNCFRNLKALFTSERTNPGSRSSYSEAK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1220467 1228042 + CmaCh20G002490.1 Cma20g00249 316063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00249 444 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 9 424 - -
Cma20g00249 444 Gene3D Transferase(Phosphotransferase) domain 1 232 422 - -
Cma20g00249 444 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cma20g00249 444 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cma20g00249 444 SMART ANK_2a 39 67 IPR002110 GO:0005515
Cma20g00249 444 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cma20g00249 444 SUPERFAMILY Ankyrin repeat 42 134 IPR036770 -
Cma20g00249 444 SUPERFAMILY Protein kinase-like (PK-like) 172 428 IPR011009 -
Cma20g00249 444 Pfam Protein tyrosine and serine/threonine kinase 163 398 IPR001245 GO:0004672|GO:0006468
Cma20g00249 444 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 424 - -
Cma20g00249 444 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cma20g00249 444 Gene3D - 34 140 IPR036770 -
Cma20g00249 444 ProSiteProfiles Protein kinase domain profile. 156 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00249 444 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cma20g00249 444 MobiDBLite consensus disorder prediction 1 24 - -
Cma20g00249 444 PIRSF ILK 2 421 - -
Cma20g00249 444 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00800 Cma-Chr10:3692285 Cma20g00249 Cma-Chr20:1220467 3.76E-09 dispersed
Cma11g00766 Cma-Chr11:3727580 Cma20g00249 Cma-Chr20:1220467 2.86E-09 dispersed
Cma18g00441 Cma-Chr18:2435883 Cma20g00249 Cma-Chr20:1220467 0 dispersed
Cma19g00288 Cma-Chr19:2190850 Cma20g00249 Cma-Chr20:1220467 4.87E-122 dispersed
Cma20g00249 Cma-Chr20:1220467 Cma18g01127 Cma-Chr18:9148198 3.49E-77 dispersed
Cma02g00045 Cma-Chr2:224626 Cma20g00249 Cma-Chr20:1220467 0 wgd
Cma20g00249 Cma-Chr20:1220467 Cma03g01354 Cma-Chr3:8629792 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69372 PF07714 PK_Tyr_Ser-Thr 9.90E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00249 - - cpep:111777411 874.774