Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00251 ATGGCGCTCAGAGGAAATGCTTCTTTGATACCGCATATTCGGCGTCGCTATCACTTCCCACCACCTCTTATTCCTTCTCTCACGCACGCTGTTTCGGCGCCTGTACTATTCTTTTGTGGAGGCTCAAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCTCAGACTCTTCTTTCTTACTTGTCAAGATGGTGAAGTTTACAGCCGAGGAGCTTCGTCGGATTATGGACTATAAACACAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCCGGTATCATTGCTCAAGAAGTTGCGGGTGATGTTCGGATGACAGATACCCGACAAGATGAGGCAGAACGGGGTATCACCATCAAGTCGACTGGAATCTCCCTCTACTACGAAATGTCTGATGAATCATTGAAGAGTTATAAGGGAGAGAGGAATGGAAATGAGTACCTTATCAATCTTATCGATTCGCCTGGGCACGTCGACTTCTCGTCCGAGGTTACAGCTGCTCTACGTATTACCGATGGTGCCCTTGTGGTGGTGGATTGTGTTGAAGGTGTTTGTGTCCAAACGGAGACAGTGCTTCGTCAGGCGTTGGGAGAGAGGATTCGACCTGTGTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTTCAAGTAGATGGCGAAGAGGCTTACCAGACCTTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATACGAGGATCCACTTCTTGGTGATGTGCAAGTGTACCCTGAGAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACCCTGACCAACTTTGCAAAGATGTACGCCTCTAAATTTGGAGTGGATGAGTCAAAAATGATGGAGAGGCTTTGGGGCGAGAACTTCTTCGACCCTGCCACCAAGAAATGGACCAGCAAGAACACTGGATCTGCAACATGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATTATTGCTACTTGCATGAATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGGGTAAAGCATTGATGAAGCGAGTGATGCAAACATGGCTCCCAGCAAGCAGTGCTCTCTTGGAAATGATGATCTTTCATCTCCCTTCCCCGGCCACGGCCCAGAAGTATCGTGTTGAGAACTTGTATGAAGGTCCACTAGATGATGCTTATGCTAGTGCCATCAGAAATTGTGACCCCGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCGGACAAGGGCAGGTTCTTTGCCTTCGGTCGAGTCTTCTCTGGGAAGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTATGTCCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAATACGGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAATGCTACTCTGACAAATGAGAAGGAAGTAGATGCTCATCCAATACGAGCCATGAAATTTTCTGTATCTCCTGTTGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGCCTTAAACGTCTGGCAAAGTCAGACCCTATGGTCGTGTGTTCCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAGCTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGACGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGCAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGACTGGCAGAGGCTATTGACGATGGTCGCATAGGCCCACGAGATGATCCTAAAATTCGGTCTAAAATTTTGGCGGAGGAGTTTGGTTGGGACAAGGATCTCGCGAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGACTCCGTGGTGGCAGGTTTCCAATGGGCGTCTAAAGAAGGTGCGTTGTCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTGTGTGATGTGGTTCTTCATGCTGATGCCATCCACAGAGGTGGTGGTCAAGTTATTCCCACAGCTAGGAGGGTAATTTACGCATCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTGTACCTGGTGGAAATTCAGGCCCCGGAGCAAGCTTTGGGAGGTATTTACAGTGTTCTTAACCAGAAGCGTGGACATGTGTTCGAGGAAATGCAGAGGCCCGGTACCCCTCTCTACAACATCAAGGCATATCTCCCTGTCATTGAGTCGTTCGGATTCTCGAGCACTCTGAGAGCTGCAACTTCTGGCCAGGCTTTCCCTCAGTGTGTGTTTGACCATTGGGACATGATGTCCTCAGATCCATTAGAAAGTGGCTCCCAAGCTGCACAGTTGGTTGCTGATATCCGTGTTTGTGTCCAAACGGAGACAGTGCTTCGTCAGGCGTTGGGAGAGAGGATTCGACCTGTGTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTTCAAGTAGATGGCGAAGAGGCTTACCAGACCTTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATACGAGGATCCACTTCTTGGTGATGTGCAAGTGTACCCTGAGAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACCCTGACCAACTTTGCAAAGATGTACGCCTCTAAATTTGGAGTGGATGAGTCAAAAATGATGGAGAGGCTTTGGGGCGAGAACTTCTTCGACCCTGCCACCAAGAAATGGACCAGCAAGAACACTGGATCTGCAACATGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATTATTGCTACTTGCATGAATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGGGTAAAGCATTGATGAAGCGAGTGATGCAAACATGGCTCCCAGCAAGCAGTGCTCTCTTGGAAATGATGATCTTTCATCTCCCTTCCCCGGCCACGGCCCAGAAGTATCGTGTTGAGAACTTGTATGAAGGTCCACTAGATGATGCTTATGCTAGTGCCATCAGAAATTGTGACCCCGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCGGACAAGGGCAGGTTCTTTGCCTTCGGTCGTGTCTTCTCTGGGAAGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTATGTCCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAGGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAATACGGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAATGCTACTCTGACAAATGAGAAGGAAGTAGATGCTCATCCAATACGAGCCATGAAATTTTCTGTATCTCCTGTTGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGCCTTAAACGTCTGGCAAAGTCAGACCCTATGGTCGTGTGTTCCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAGCTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGACGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGCAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGACTGGCAGAGGCTATTGACGATGGTCGCATAGGCCCACGAGATGATCCTAAAATTCGGTCTAAAATTTTGGCGGAGGAGTTTGGTTGGGACAAGGATCTCGCGAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGACTCCGTGGTGGCAGGTTTCCAATGGGCGTCTAAAGAAGGTGCGTTGTCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTGTGTGATGTGGTTCTTCATGCTGATGCCATCCACAGAGGTGGTGGTCAAGTTATTCCCACAGCTAGGAGGGTAATTTACGCATCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTGTACCTGGTGGAAATTCAGGCCCCGGAGCAAGCTTTGGGAGGTATTTACAGTGTTCTTAACCAGAAGCGTGGACATGTGTTCGAGGAAATGCAGAGGCCCGAGCTGCAACTTCTGGCCAGGCTTTCCCTCAGTGTGTGTTTGACCATTGGGACATGA 4605 47.75 MALRGNASLIPHIRRRYHFPPPLIPSLTHAVSAPVLFFCGGSKGQSLPLLSLHRLSDSSFLLVKMVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPELQLLARLSLSVCLTIGT 1534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1228996 1234850 + CmaCh20G002510.1 Cma20g00251 316065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00251 1534 CDD EF2_II 1129 1224 - -
Cma20g00251 1534 SMART EFG_C_a 788 877 IPR000640 -
Cma20g00251 1534 CDD aeEF2_snRNP_like_IV 1313 1485 - -
Cma20g00251 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1095 IPR027417 -
Cma20g00251 1534 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 889 1520 - -
Cma20g00251 1534 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 65 888 - -
Cma20g00251 1534 Pfam Elongation factor G, domain IV 1365 1476 IPR005517 GO:0005525
Cma20g00251 1534 Pfam Elongation factor G, domain IV 675 786 IPR005517 GO:0005525
Cma20g00251 1534 PANTHER - 889 1520 - -
Cma20g00251 1534 PANTHER - 65 888 - -
Cma20g00251 1534 SMART EFG_IV_2 1360 1476 IPR005517 GO:0005525
Cma20g00251 1534 SMART EFG_IV_2 670 786 IPR005517 GO:0005525
Cma20g00251 1534 TIGRFAM small_GTP: small GTP-binding protein domain 84 239 IPR005225 GO:0005525
Cma20g00251 1534 Gene3D - 784 890 - -
Cma20g00251 1534 Gene3D - 1474 1530 - -
Cma20g00251 1534 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Cma20g00251 1534 CDD EF2_II 439 534 - -
Cma20g00251 1534 Pfam Elongation factor Tu domain 2 1148 1221 IPR004161 GO:0005525
Cma20g00251 1534 Pfam Elongation factor Tu domain 2 458 531 IPR004161 GO:0005525
Cma20g00251 1534 SUPERFAMILY Translation proteins 406 540 IPR009000 -
Cma20g00251 1534 CDD aeEF2_snRNP_like_IV 623 795 - -
Cma20g00251 1534 CDD EF2 84 294 - -
Cma20g00251 1534 SUPERFAMILY EF-G C-terminal domain-like 1238 1314 IPR035647 -
Cma20g00251 1534 Pfam Elongation factor Tu GTP binding domain 81 406 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 Pfam Elongation factor Tu GTP binding domain 887 1096 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 SUPERFAMILY Translation proteins 1096 1230 IPR009000 -
Cma20g00251 1534 CDD EF2_snRNP_III 551 623 - -
Cma20g00251 1534 Pfam Elongation factor G C-terminus 788 875 IPR000640 -
Cma20g00251 1534 SUPERFAMILY Ribosomal protein S5 domain 2-like 1316 1480 IPR020568 -
Cma20g00251 1534 SUPERFAMILY EF-G C-terminal domain-like 548 624 IPR035647 -
Cma20g00251 1534 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1240 1317 - -
Cma20g00251 1534 Gene3D Elongation Factor G (Translational Gtpase), domain 3 550 627 - -
Cma20g00251 1534 Pfam Elongation Factor G, domain III 551 613 IPR041095 -
Cma20g00251 1534 Pfam Elongation Factor G, domain III 1241 1303 IPR041095 -
Cma20g00251 1534 CDD eEF2_snRNP_like_C 791 869 - -
Cma20g00251 1534 Gene3D - 67 301 IPR027417 -
Cma20g00251 1534 Gene3D Translation factors 1097 1238 - -
Cma20g00251 1534 Gene3D Translation factors 407 548 - -
Cma20g00251 1534 PRINTS GTP-binding elongation factor signature 217 226 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 PRINTS GTP-binding elongation factor signature 165 175 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 PRINTS GTP-binding elongation factor signature 181 192 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 SUPERFAMILY EF-G C-terminal domain-like 791 885 IPR035647 -
Cma20g00251 1534 CDD EF2_snRNP_III 1241 1313 - -
Cma20g00251 1534 SUPERFAMILY EF-G C-terminal domain-like 1481 1517 IPR035647 -
Cma20g00251 1534 Gene3D Yeast translation eEF2 (G' domain) 976 1080 - -
Cma20g00251 1534 SUPERFAMILY Ribosomal protein S5 domain 2-like 626 790 IPR020568 -
Cma20g00251 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 405 IPR027417 -
Cma20g00251 1534 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 408 IPR000795 GO:0003924|GO:0005525
Cma20g00251 1534 Gene3D - 634 783 IPR014721 -
Cma20g00251 1534 Gene3D - 1324 1473 IPR014721 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00251 Cma-Chr20:1228996 Cma20g00268 Cma-Chr20:1300103 0 dispersed
Cma20g00248 Cma-Chr20:1215379 Cma20g00251 Cma-Chr20:1228996 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00251 K03234 - csv:101208886 1623.22