Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00254 ATGATTTCAGCCACGGAGTTCCCAAGCCAAGCTGGAGAAGGATCTGCCTCTTCCCACAAAAAAATGGGAAGAGGTAAGATTGAAATTAAACGAATTGAAAATACCACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGTTTGCTTAAAAAAGCTTACGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCACTCGTGGCCGTCTCTATGAATATGCCAATAACAGTGTTAGAGGAACCATTGAAAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCTGGATTATCAGTTGCAGAAGCTAATGTACAGTTTTACCAGCAAGAAGCATCAAAGCTGAAGAGACAGATCCGAGAGATTCAGAACTCAAACAGGCATATTCTTGGTGAAGCACTCAGCTCATTGTCTTTAAAGGACCTGAAAAGCTTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAGAGGGAAATGGAGCTTCAGAACCACAACAACTATCTAAGAGCACAGATTGCTGAACATGAAAGAATACAACAACAGCAACAAACGAACATGATGCAAAGGGGAACGTATGAGACAGTGGGAGGAGGGCAGTACGAGGAGAACAGAAGCTATGGCGGCGTGGGGCTTATGGATTCCGACACCCATTACGCCCATCAAGACCATCTCACAGCCCTTCAGCTCGTTTAA 756 43.78 MISATEFPSQAGEGSASSHKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQTNMMQRGTYETVGGGQYEENRSYGGVGLMDSDTHYAHQDHLTALQLV 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1241469 1245199 + CmaCh20G002540.1 Cma20g00254 316068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00254 251 SUPERFAMILY SRF-like 23 94 IPR036879 GO:0003677|GO:0046983
Cma20g00254 251 Coils Coil 146 166 - -
Cma20g00254 251 MobiDBLite consensus disorder prediction 1 16 - -
Cma20g00254 251 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 Coils Coil 102 129 - -
Cma20g00254 251 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 15 225 - -
Cma20g00254 251 CDD MADS_MEF2_like 23 99 IPR033896 GO:0000977|GO:0045944
Cma20g00254 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 225 - -
Cma20g00254 251 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma20g00254 251 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 Pfam K-box region 108 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma20g00254 251 Gene3D - 35 97 IPR036879 GO:0003677|GO:0046983
Cma20g00254 251 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Cma20g00254 251 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00152 Cma-Chr7:778548 Cma20g00254 Cma-Chr20:1241469 8.58E-98 dispersed
Cma20g00254 Cma-Chr20:1241469 Cma08g00942 Cma-Chr8:5875347 5.16E-48 dispersed
Cma13g00575 Cma-Chr13:5776852 Cma20g00254 Cma-Chr20:1241469 5.63E-95 wgd
Cma20g00254 Cma-Chr20:1241469 Cma03g01355 Cma-Chr3:8640127 6.68E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36974 PF01486 K-box 1.30E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00254 K09264 - csv:101217987 398.282