Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00258 ATGTTCGCTCGGCGCATCAAGTTCCCACTCACAAATCGTGTTCACTTCTTCTTCATAGGTGTCTCAATCTCAGAGACACCCACCTCTACAACTCCGACCACCACCACCTTCCGATCGTCGGCGGAGGAAACAGAGAGGGTCTCTGCGAATGGATGGGGGTTTCACTTGTACCACTCTAATCCTGTTCCTATTCCTCTTCATTCACTGTTTTTTCCCAGTTCTTGTTCTTCTGTCCTGTTCTTGGATCTTTTCTTTTATGCCTTTCATGGTTCATCAAGAGCAGATCCCACGCAAAAACAGGGCAAATACAGAGCAGCCTCTTCGACCCATCAAAAGGACATCACCACCCCAATAACCACCGTCCCAACAATCAACATCCCCACTACTTCCAACCCAGATTCCGTCTCCCCGACCATCACAACCCCAAGCTTTACCCCTGCAACCACCACCACCGGTGGCTCCAGCTGGTGCATTGCCAATCTCGGCGCATCGCAGGCAGCCTTACAACTAGCTCTGGACTACGCTTGCGGCATGGGCGGCGCCGATTGCTCCGCGATTCAAACCGGTGGAAGATGCTACAACCCAAATTCAGTTCGAGATCATGCTTCTTACGCCTTCAATAGCTATTATCAGAAAAACCCACTTCCGAATAGCTGTAATTTTGGAGGCACTGCCGTGATCACCAGCACTAATCCCAGTAAGCTATCTTTATCGCTTTCTGCAGTGGCTCGTGCGAGTACCCATCAACAAGCACGAGTTCATCGGTTCTCAACACTACAAATTCAAGCGGCTCCACCGTGTTCGGCGCTGTTCCTTCCGGCCCCTCCACCTCCTCGTCGGCACCCAAATACTCCTCCTCCTCCGCCCTCTTCCTTCTTCTTATTGCTTTCTAGAAACTTGTGCAATTTCTCAAGGATTTTTGTAAAAAGGGGCTTATTGGGTTTTGGTTTGATGGAGGATCGGGGAAGGGCGATGGAAAAAGTGCGCTGCTCTGCGTGTGATCCGGTAGGATGCAGCAAGATCAAGGCAAAAAGTTTATGCCAACAGAATTCGACCGAAATGGAGTTTTTCTCTGATTATGGCGATGCCAGTAGATATAAAATTCAGGAAGTAATCGGGAAAGGAAGCTATGGGGTTGTGTGTTCTGCTATTGACACACGCACTGGCGACAAGGTTGCAATAAAGAAGATACACAATATTTTTGAGCATATATCTGATGCTGTTAGAATTCTTCGTGAGATTAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACATGTTATGCTGCCACCTTCACGGAGGGATTTCAAAGATATCTACGTTGTTTTTGAGCTGATGGAATCAGATCTTCACCAAGTTATTAAAGCTAATGATGATCTTACTCGAGAACATTACCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGGCGTATCTGACTCAAAGCTTCATTTTGCAGCTAATGTCTACCATCGAGATTTAAAACCAAAGAATATATTGGCAAATTCAAATTGTAAACTTAAAATATGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACGCCAACGACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTATCGAGCTCCCGAGCTCTGTGGTTCATTTTTCTCTAAGTATACACCTGCAATTGATATATGGAGCATTGGCTGCATATTTGCTGAAGTTTTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTCGTTCACCAGCTTGATTTGATGGCAGATCTCCTTGGAACTCCTTCACTAGATACAATCTCCAGGGTACGCAATGACAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCGGTGCCATTTGCTCAAAAGTTTCCGAACGCAGATCCTTTAGCGCTGAGACTTCTAGAAAGGTTGCTTGCTTTCGATCCAAAAGATAGGCCGACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCTCAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTCACAAAAGAAGACATTCAAGAGCTAATCTTCCGGGAGATACTAGAATATCACCCTCAGCTACTAAAAGATTACATGAATGGGACTGAGAGGACAAATTTTCTATATCCAAGTGCTGTCGACCAATTTAGAAAGCAGTTTGCACATCTCGAGGAAAATGGTGGTAAAAGTGCGCCGGTTATTCCTCTTGACAGGAAGCATGTATCCCTTCCAAGGTCAACAGTTGTACACTTGAACCCGGTCTATTCTAAGGACCAAATAAATAATGTATCCCTTCAAGATGTGAAGATCTCCGAAGAGTCATACCGAAAGAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCAAGGACCATGCAGGCACCACAGAAAATCCCGATTGCAGCTAAGCCTGGAAGAGTGGTTGGACCAGTAATAGCCGATGAGAATGGGAGGGTAGTGAAGGAACCATATGATCCAAGAACGTTGATCAGAGGAGCCATTCTTCCTCCTACATATCACTACCAAAAACCCATTGCTGGAAATCAAGAAAGATCTGCAGCAGAAACAAAACTGGATATTTCATTAAGAGCCACTAAGCAAGCATCCCAGTGTGGCATGGCTTCCAAATTAGGATCAGATATAGCCATCAGCATCGACTCAAACCCTTTTTACATGACACGAGCAGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCGACACGAACTTTCTGCAGGCCAAGGCGGCCCAATACAGTGGTCTGGGTGCAGCAACGGCCACCACCACATCGGTCGCTCAAAGAAAGGTGATTGCTGATAGAAAAAGGCATTTGATGATAGAAGAAGAAGTGAGAGGAGAGGAGGGTGGCCGTCAGCTCGGCTGGCTTGTGTGTAAGAATAGATGGAAGAGAGAAATATTAATGGAGAACGAGATTAACATTGTCGACGGCGGGGCGTCGGGGGACGATCCGACCACGGAGGATTTTTATGATTTTGATCAGCGGGAGAGCGATGCAAAGGTCGCAGAGCTGAGCCAGAAAATTGAGGTTTTGGAGCGTGAAAAGAAAAAATTGGTTGACGAAAATGAAGAATTCAAAGATAAGGTTAAAAAAGTTTCTGTGGAGATTGAAGGATTCAAGAGTGAAGAGGGGTCGCTGAAAGAACAACTGAAAGAAATAGAGAAACAACTTGAACGTTCTGAAGAGGGAAATAAGGTGTTAGAATCGGTTGCAGCGAGAGCATTGGAGCTTGAGACTGAGGTCGCTAGGCTACAGCATGATTTGATATCTGCAATGAATGGAGCTGAAGAGGCAAATACCGAAGTCGTAGAGTTGAGGAAAAATTTGGGGGAAAAGGGAGAAAAGGTTGAAGCTATGGAGGAACAGTTGGAAGCCCTGAAGAAAACAAAGGTGGAGAGTGAAAAGAAAGTCAGAGAATTGGAGAGGAAAGTTGGGGTGTTGGAGGTCAAGGAGATAGAGGAGAAGAGTAAAAAAGTTCGAGTGGAGGAGGAAATGAGAGACAAAATCGAGGCGAGGGAGAGGGAAATCACCAGTCTTAAGACAGTTGTCCAGGATTTGGAATTGATGATAACGAAGAACGAGCTGGAGTTAGATAAGTGGATCAAGGAGAAACTTAACGTCGAAAAGTTGTTGAACGAGTCGGAAGAGAAAACGAAAACGATCGAGTTGAATATGGCTCAGTTGCAGAAGGAAGTAGAGGAAGCACACAAAGTCATTGGTGGATTAAAGGAGAAAGCATTGAATACTTTGAATGGAACTGCAGAGGAACTCAAGTCAGCTTTCAAAGGTGCAGAGAAGGAGTTGAACTCGAACTGGCCTGTAATTGCAGGTTCGACTGGAGTCGTTGCTGCCATAGCTGCACTAGCCTTTGCTTTGTATGGAAGGCAAAGATAG 3981 45.01 MFARRIKFPLTNRVHFFFIGVSISETPTSTTPTTTTFRSSAEETERVSANGWGFHLYHSNPVPIPLHSLFFPSSCSSVLFLDLFFYAFHGSSRADPTQKQGKYRAASSTHQKDITTPITTVPTINIPTTSNPDSVSPTITTPSFTPATTTTGGSSWCIANLGASQAALQLALDYACGMGGADCSAIQTGGRCYNPNSVRDHASYAFNSYYQKNPLPNSCNFGGTAVITSTNPSKLSLSLSAVARASTHQQARVHRFSTLQIQAAPPCSALFLPAPPPPRRHPNTPPPPPSSFFLLLSRNLCNFSRIFVKRGLLGFGLMEDRGRAMEKVRCSACDPVGCSKIKAKSLCQQNSTEMEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTGVSDSKLHFAANVYHRDLKPKNILANSNCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMADLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPISKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHLNPVYSKDQINNVSLQDVKISEESYRKNSRDSEGRLTNISRTMQAPQKIPIAAKPGRVVGPVIADENGRVVKEPYDPRTLIRGAILPPTYHYQKPIAGNQERSAAETKLDISLRATKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISIDTNFLQAKAAQYSGLGAATATTTSVAQRKVIADRKRHLMIEEEVRGEEGGRQLGWLVCKNRWKREILMENEINIVDGGASGDDPTTEDFYDFDQRESDAKVAELSQKIEVLEREKKKLVDENEEFKDKVKKVSVEIEGFKSEEGSLKEQLKEIEKQLERSEEGNKVLESVAARALELETEVARLQHDLISAMNGAEEANTEVVELRKNLGEKGEKVEAMEEQLEALKKTKVESEKKVRELERKVGVLEVKEIEEKSKKVRVEEEMRDKIEAREREITSLKTVVQDLELMITKNELELDKWIKEKLNVEKLLNESEEKTKTIELNMAQLQKEVEEAHKVIGGLKEKALNTLNGTAEELKSAFKGAEKELNSNWPVIAGSTGVVAAIAALAFALYGRQR 1326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1252413 1261980 - CmaCh20G002580.1 Cma20g00258 316072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00258 1326 Gene3D Phosphorylase Kinase; domain 1 381 713 - -
Cma20g00258 1326 Pfam X8 domain 156 225 IPR012946 -
Cma20g00258 1326 Gene3D Transferase(Phosphotransferase) domain 1 452 690 - -
Cma20g00258 1326 Coils Coil 1181 1201 - -
Cma20g00258 1326 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 350 843 - -
Cma20g00258 1326 SUPERFAMILY Tropomyosin 1025 1232 - -
Cma20g00258 1326 Coils Coil 1276 1296 - -
Cma20g00258 1326 SUPERFAMILY Protein kinase-like (PK-like) 362 671 IPR011009 -
Cma20g00258 1326 ProSiteProfiles Protein kinase domain profile. 366 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00258 1326 Coils Coil 1023 1116 - -
Cma20g00258 1326 Gene3D - 150 255 - -
Cma20g00258 1326 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 350 843 - -
Cma20g00258 1326 SMART serkin_6 366 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00258 1326 Coils Coil 1212 1274 - -
Cma20g00258 1326 CDD STKc_TDY_MAPK 365 712 - -
Cma20g00258 1326 MobiDBLite consensus disorder prediction 93 111 - -
Cma20g00258 1326 Coils Coil 1124 1179 - -
Cma20g00258 1326 SMART X8_cls 155 269 IPR012946 -
Cma20g00258 1326 MobiDBLite consensus disorder prediction 92 111 - -
Cma20g00258 1326 Pfam Protein kinase domain 366 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00258 1326 ProSitePatterns Protein kinases ATP-binding region signature. 372 396 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00653 Cma-Chr4:3336026 Cma20g00258 Cma-Chr20:1252413 0 dispersed
Cma16g00446 Cma-Chr16:2221667 Cma20g00258 Cma-Chr20:1252413 0 dispersed
Cma17g00278 Cma-Chr17:1464912 Cma20g00258 Cma-Chr20:1252413 0 dispersed
Cma18g00454 Cma-Chr18:2509772 Cma20g00258 Cma-Chr20:1252413 3.82E-41 dispersed
Cma19g01073 Cma-Chr19:8972462 Cma20g00258 Cma-Chr20:1252413 4.64E-148 dispersed
Cma02g00040 Cma-Chr2:206885 Cma20g00258 Cma-Chr20:1252413 1.23E-149 transposed
Cma10g01180 Cma-Chr10:8610048 Cma20g00258 Cma-Chr20:1252413 4.61E-34 transposed
Cma19g01078 Cma-Chr19:8998809 Cma20g00258 Cma-Chr20:1252413 2.43E-48 transposed
Cma11g01956 Cma-Chr11:12834957 Cma20g00258 Cma-Chr20:1252413 0 wgd
Cma13g00563 Cma-Chr13:5723854 Cma20g00258 Cma-Chr20:1252413 5.66E-30 wgd
Cma19g01072 Cma-Chr19:8971067 Cma20g00258 Cma-Chr20:1252413 4.73E-92 wgd
Cma02g00039 Cma-Chr2:202860 Cma20g00258 Cma-Chr20:1252413 0 wgd
Cma20g00258 Cma-Chr20:1252413 Cma03g01372 Cma-Chr3:8710252 1.91E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69373 PF00069 Pkinase 6.20E-62 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00258 - - csv:101216657 1126.69