Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00259 ATGTCAAATAATGAAGATCATGAGAAGGATCCTTATTACCCAAATTTTGAAGCTTTTGATCCTTCTAATGTGGGGTTTTACTCTGATTTCTTATATGACTACAACAACTTCCTCTCTACCAACATCGACATATCGTGCTCGTCGTCGGAACCTATTTCTCCAATCAACGATGCTTTGAAGAAGTCTTTGGGTCTCGGAGAGTCGGTGACGACCGGTGAGCATCCATCGACGCCGAATTCCTCGACTACATGTTCATCGGTCGAGGTGGCCGCCGGTGGTAGCGATTCAGCCAAGAGTGGGGAGGTGAAAGTGGATGGACGAAAAAAGAAGGAGAAAAGAGAAAAAGGGCCAAGATTTGCGTTCTTGACCAAGTCTGAAATTGATAACCTTGAAGATGGGTATAGATGGAGAAAATATGGGCAAAAAGCTGTAAAAAACAGCCCTTTTCCAAGTGTGAAAAAGAGAGTAGAAAGATCATCAGAAGATCCATGTTTTGTTGTAACAACGTATGAAGGGAAACACAACCACTACTGTCCGATTACACTTCGAGGGCACAATGTGGCCGGAGTTTATCCGCCGTCGGCTTCACCGTCGTTGATTCCGGCGAGAATCTTGTCCGGCGAGTTCTATGGAGGGGTGGATGTGCAGCAACAATACTACGAGGTTCCTGGGTATGAGGTGTTGGAAGATCTGGTAAATCCAAAGCAAAACCCATGA 717 45.33 MSNNEDHEKDPYYPNFEAFDPSNVGFYSDFLYDYNNFLSTNIDISCSSSEPISPINDALKKSLGLGESVTTGEHPSTPNSSTTCSSVEVAAGGSDSAKSGEVKVDGRKKKEKREKGPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPFPSVKKRVERSSEDPCFVVTTYEGKHNHYCPITLRGHNVAGVYPPSASPSLIPARILSGEFYGGVDVQQQYYEVPGYEVLEDLVNPKQNP 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1265843 1267089 + CmaCh20G002590.1 Cma20g00259 316073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00259 238 SMART WRKY_cls 130 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00259 238 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 14 192 - -
Cma20g00259 238 MobiDBLite consensus disorder prediction 69 92 - -
Cma20g00259 238 ProSiteProfiles WRKY domain profile. 125 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00259 238 Pfam WRKY DNA -binding domain 131 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00259 238 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 192 IPR044810 GO:0003700
Cma20g00259 238 SUPERFAMILY WRKY DNA-binding domain 123 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g00259 238 Gene3D WRKY domain 117 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g00259 238 MobiDBLite consensus disorder prediction 67 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g01082 Cma20g00259 CCT
Cma19g01082 Cma20g00259 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00259 Cma-Chr20:1265843 Cma17g00379 Cma-Chr17:2109793 2.33E-37 dispersed
Cma11g01961 Cma-Chr11:12851050 Cma20g00259 Cma-Chr20:1265843 2.64E-46 wgd
Cma19g01082 Cma-Chr19:9010129 Cma20g00259 Cma-Chr20:1265843 3.07E-45 wgd
Cma20g00259 Cma-Chr20:1265843 Cma03g01378 Cma-Chr3:8745541 1.64E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36975 PF03106 WRKY 1.40E-06 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00259 - - cmos:111448234 436.417