Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00260 ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTATCCCCCTCCGCCTCCAACATCCTCGGCGAATCCCGCGTCACCATGAGGAAAACCGGTGGCAGACCCAAGCCCGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGCCCATTCTCCGGTGAGCCTCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTCTCCGCCGACCCCGAGACCTTCGCCAAAAACAGGGAGCTGGAAGTAATCCACTCAAGATGGGCCATGCTTGGGGCTCTGGGATGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGTATTTTGGCTATTTGGGCGTGTCAGGTTGTGCTCATGGGTGCGGTCGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATATACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTTGCAGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACCGGCAAAGGGCCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTACCTGGAAATTATCTTATTCAATCCTCTCCAAACATTTTTGTCTTTGTCTCCTCTTCTCCTCCTCCTCTTCCATCTTCTATTGCCCCACTATCCCTACTTCTTCATTACTCCTTTTCTGCTCTCTCTTTTTGGGGCTCTGGATTTGTTGTTGGGTTCAGTTCTTTCAGACAACATTTTGGCATATCCCCCCATGCTTTCCCCCTCTCCATTGCCTCAACACGATTCCCTTTGCTTCCCTTTCTGGGTTATGGAGGAACACCCAAATCTGGGTCCATAAGCTATGTTCAAGGAAAAGAACTCAACATTGATTTTGGCTTAGTTTCAATGTTCGAGGAAATGATGTTCTTAGTTTCTTTTGAAATGTATAAAGAAAGTACTGATGAGGAGGTTGAACTTGAAGTTCCCTTTGGAGTTTTAGCTTACAATCGATCGGTAATGGCGTCCGGGAATTCGTTGAATGATCATTTATCTAAGAAGACTTCATTTTGGGGCTTGTCATTGTGGGTTTTGATATGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTGTTATCCATCTGGATCCTGTTTCGAAAAAAATCTAAAAGATCCATGGACAAGCTCCCCATTTCCCAGATACCTAATTTTTCAAAAGATATCAGGATAGATCAGGTTGGGACTCAAATTCCCAATGATCACCCTGAAAATAGGCTTCTTTCTGTTGATGTCAAAAGAAATCTTGAACATTCTGAAGTTATGGCTGTCACGAAATCGAGTGAACCTGATAACAATAGCCAATGTAGTTCCACTTATCAACACGAAAAACTTGGCAATTCACAATCTGGGGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCGAGGTCGCATGGTGGATATGGAGGAATTGTGCCACCGTCTCCACTCGTTGGCTTGCCAGAAATTTCACATCTTGGGTGGGGTCACTGGTTCACTCTCAGGGATCTAGAGCTTGCTACGAATCGTTTTTCGACTGAGAATATTCTTGGGGAAGGAGGATATGGAGTTGTGTATAAGGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGTCATAAGAATCTCGTCCGACTGCTCGGTTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAGTATGTGAACAATGGAAATCTAGAACAGTGGCTACACGGAGCCATGAGCCAACACGGCACGTTTACTTGGGAGGCTCGCATGAGGGTTCTTCTTGGCACGGCTAAGGCGCTTGCCTATTTACACGAAGCAATCGAGCCAAAAGTTGTTCATAGAGATATCAAATCGAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGACAGATAG 2301 47.63 MAASSMALSSPSLAGQAVKLSPSASNILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGNYLIQSSPNIFVFVSSSPPPLPSSIAPLSLLLHYSFSALSFWGSGFVVGFSSFRQHFGISPHAFPLSIASTRFPLLPFLGYGGTPKSGSISYVQGKELNIDFGLVSMFEEMMFLVSFEMYKESTDEEVELEVPFGVLAYNRSVMASGNSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSIWILFRKKSKRSMDKLPISQIPNFSKDIRIDQVGTQIPNDHPENRLLSVDVKRNLEHSEVMAVTKSSEPDNNSQCSSTYQHEKLGNSQSGEEGSSGNARKQASRSHGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTFTWEARMRVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYDR 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1270014 1274810 - CmaCh20G002600.1 Cma20g00260 316074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00260 766 MobiDBLite consensus disorder prediction 29 48 - -
Cma20g00260 766 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cma20g00260 766 PANTHER OS10G0497600 PROTEIN 412 764 - -
Cma20g00260 766 Pfam Protein kinase domain 597 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00260 766 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Cma20g00260 766 Gene3D Phosphorylase Kinase; domain 1 579 671 - -
Cma20g00260 766 MobiDBLite consensus disorder prediction 513 562 - -
Cma20g00260 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Cma20g00260 766 MobiDBLite consensus disorder prediction 513 553 - -
Cma20g00260 766 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Cma20g00260 766 PANTHER OS01G0323000 PROTEIN 412 764 - -
Cma20g00260 766 Gene3D Transferase(Phosphotransferase) domain 1 672 765 - -
Cma20g00260 766 SMART serkin_6 596 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00260 766 Coils Coil 616 636 - -
Cma20g00260 766 ProSitePatterns Protein kinases ATP-binding region signature. 602 625 IPR017441 GO:0005524
Cma20g00260 766 SUPERFAMILY Protein kinase-like (PK-like) 577 764 IPR011009 -
Cma20g00260 766 ProSiteProfiles Protein kinase domain profile. 596 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00036 Cma20g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00038 Cma-Chr2:195273 Cma20g00260 Cma-Chr20:1270014 0 dispersed
Cma07g00128 Cma-Chr7:661812 Cma20g00260 Cma-Chr20:1270014 2.32E-179 dispersed
Cma07g00129 Cma-Chr7:663366 Cma20g00260 Cma-Chr20:1270014 2.32E-179 dispersed
Cma13g00541 Cma-Chr13:5617065 Cma20g00260 Cma-Chr20:1270014 1.28E-176 dispersed
Cma14g00956 Cma-Chr14:4960365 Cma20g00260 Cma-Chr20:1270014 3.15E-162 dispersed
Cma11g01962 Cma-Chr11:12853356 Cma20g00260 Cma-Chr20:1270014 0 wgd
Cma19g01083 Cma-Chr19:9013783 Cma20g00260 Cma-Chr20:1270014 0 wgd
Cma02g00036 Cma-Chr2:192688 Cma20g00260 Cma-Chr20:1270014 0 wgd
Cma20g00260 Cma-Chr20:1270014 Cma03g01380 Cma-Chr3:8755528 6.79E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69374 PF00069 Pkinase 4.60E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00260 - - csv:101214087 665.225