Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00268 ATGAAGGAGTTCTCTTGGTGTGTCTTGCTAGGGGTGTTGGCATGGTTCGTGATTGGCTTGAACGCTAGTGCTGGCGATATTGACCTACAATACAGGACTTGCATAAAACACTGTGAAGAAACAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCAGATGGCGTTTCTGTTGATCAGCCATGGTATATGCAAGAACCACTTTACATAAGGTGGAAGCAATGGGACTGCCAAAGTGATTGCCGTTACCATTGCATGGTCAAACGAGAGGGCGAAAGAGAAGCACTTGGCTATCATCCTGTTAAATATCATGGCAAATGGCCCTTCAAGCGTATATATGGAATCCAGGAACCCGTTTCTGTAGCATTCTCTGCTCTGAACCTTTCAATGCATTTTCATGGCTGGCTGTCCTTTTTTATCCTTCTATATTATAAGTTACCTTTGAGACAAGACAGGAAGGCACATTATGAATTTGCCAGTTTGTGGCACATTTATGCACTCTTTGCAATCAACTCTTGGTTTTGGAGTGCTGTTTTCCACAGTCGTGATGTGGTTCTGACAGAGAAATTAGATTACTCATCTGCTGTGGCATTACTTGGGTTTTCACTCATTCTAGCAATTCTAAGAAGTTTCAATGCGAGGCATGAGGCTACCAGAGTCATGGTTGCAGCTCCTTTGCTTGCTTTTGCACTTACGCATATCTTATACATCAACTTTTACGAACTTGATTATGGGTGGAACATGATTGTCTGTGTTACCATGGGGTTGTCTCAACTTCTGATCTGGGCAATCTGGGCCGGTGTCACCCACCATCCTTCCCGGTGGAAAGTGTGGATGGTGGTTGTGGGCGGTGGGCTAGCATTACTACTGGAAATCTATGATTTTCCACCATATGAAGGGCTCGTAGATGCTCATGCTCTGTGGCACGCCACAACCATCCCTCTGACCTGTGTGTGGTGGAGTTTCATCAGAGATGATGCTGAGTTTCAGACCTCCAATCTTCTCAAGAAGGCCAAACTTGTCAAGATGGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAACATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCCGGTATCATTGCTCAAGAAGTTGCGGGTGATGTTCGGATGACAGATACCCGACAAGATGAGGCAGAACGGGGTATCACCATCAAGTCGACTGGAATCTCCCTCTACTACGAAATGTCTGATGAATCATTGAAGAGTTATAAGGGAGAGAGGAATGGAAATGAGTACCTTATCAATCTTATCGATTCGCCTGGGCACGTCGACTTCTCGTCTGAGGTTACAGCTGCTCTACGTATTACCGATGGTGCCCTTGTGGTGGTGGATTGTGTTGAAGGTGTTTGTGTCCAAACGGAGACAGTGCTTCGTCAGGCGTTGGGAGAGAGGATTCGACCTGTGTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTTCAAGTAGATGGCGAAGAGGCTTACCAGACCTTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATACGAGGATCCACTTCTTGGTGATGTGCAAGTGTACCCTGAGAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACCCTGACCAACTTTGCAAAGATGTACGCCTCTAAATTTGGAGTGGATGAGTCAAAAATGATGGAGAGGCTTTGGGGCGAGAACTTCTTCGACCCTGCCACCAAGAAATGGACCAGCAAGAACACTGGATCTGCAACATGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATTATTGCTACTTGCATGAATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGGGTAAAGCATTGATGAAGCGAGTGATGCAAACATGGCTACCAGCAAGCAGTGCTCTCTTGGAAATGATGATCTTTCATCTCCCTTCCCCGGCCACGGCACAAAAGTATCGTGTTGAGAATTTGTATGAAGGTCCACTAGACGATGCTTATGCTAGTGCCATCAGAAATTGTGATCCCGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCGGACAAGGGCAGGTTCTTTGCCTTCGGTCGTGTCTTCTCTGGGAAGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTATGTCCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAGGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAATACGGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAATGCTACTCTGACAAATGAGAAGGAAGTAGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTTGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGCCTTAAACGTCTGGCAAAGTCAGACCCTATGGTCGTGTGTTCCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAGCTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGACGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGCAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGACTGGCAGAGGCTATTGACGATGGTCGCATAGGCCCACGAGATGATCCTAAAATTCGGTCTAAAATTTTGGCGGAGGAGTTTGGTTGGGACAAGGATCTCGCGAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGACTCCGTGGTGGCAGGTTTCCAATGGGCGTCTAAAGAAGGTGCGTTGTCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTGTGTGATGTGGTTCTTCATGCTGATGCCATCCACAGAGGAGGTGGTCAAGTTATTCCCACAGCTAGGAGGGTAATTTACGCATCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTGTACCTGGTGGAAATTCAGGCCCCGGAGCAAGCTTTGGGAGGTATTTACAGTGTTCTTAACCAGAAGCGTGGACATGTGTTCGAGGAAATGCAGAGGCCCGGTACCCCTCTCTACAACATCAAGGCATATCTCCCTGTCATTGAGTCGTTCGGATTCTCGAGCACTCTGAGAGCTGCAACTTCTGGCCAGGCTTTCCCTCAGTGTGTGTTTGACCATTGGGACATGATGTCCTCAGATCCATTAGAAAGTGGCTCCCAAGCTGCGCAGTTGGTTGCTGATATCCGTAAGAGGAAGGGATTGAAGGAGCAGATGACTCCATTGTCGGAGTTCGAAGACAAGCTTTAA 3567 46.71 MKEFSWCVLLGVLAWFVIGLNASAGDIDLQYRTCIKHCEETGCIDQQCFPQCKFSSDGVSVDQPWYMQEPLYIRWKQWDCQSDCRYHCMVKREGEREALGYHPVKYHGKWPFKRIYGIQEPVSVAFSALNLSMHFHGWLSFFILLYYKLPLRQDRKAHYEFASLWHIYALFAINSWFWSAVFHSRDVVLTEKLDYSSAVALLGFSLILAILRSFNARHEATRVMVAAPLLAFALTHILYINFYELDYGWNMIVCVTMGLSQLLIWAIWAGVTHHPSRWKVWMVVVGGGLALLLEIYDFPPYEGLVDAHALWHATTIPLTCVWWSFIRDDAEFQTSNLLKKAKLVKMVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1300103 1308691 - CmaCh20G002680.1 Cma20g00268 316082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00268 1188 SMART EFG_C_a 1069 1158 IPR000640 -
Cma20g00268 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 686 IPR027417 -
Cma20g00268 1188 CDD EF2_snRNP_III 832 904 - -
Cma20g00268 1188 SUPERFAMILY Ribosomal protein S5 domain 2-like 907 1071 IPR020568 -
Cma20g00268 1188 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 403 418 IPR031157 -
Cma20g00268 1188 Pfam Elongation factor Tu GTP binding domain 362 687 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 SMART EFG_IV_2 951 1067 IPR005517 GO:0005525
Cma20g00268 1188 CDD EF2 365 575 - -
Cma20g00268 1188 Gene3D - 915 1067 IPR014721 -
Cma20g00268 1188 Pfam Elongation factor Tu domain 2 739 812 IPR004161 GO:0005525
Cma20g00268 1188 Gene3D Elongation Factor G (Translational Gtpase), domain 3 831 908 - -
Cma20g00268 1188 CDD aeEF2_snRNP_like_IV 904 1076 - -
Cma20g00268 1188 SUPERFAMILY EF-G C-terminal domain-like 829 905 IPR035647 -
Cma20g00268 1188 Gene3D Translation factors 688 829 - -
Cma20g00268 1188 Pfam Per1-like family 70 330 IPR007217 GO:0006506
Cma20g00268 1188 SUPERFAMILY EF-G C-terminal domain-like 1072 1183 IPR035647 -
Cma20g00268 1188 PRINTS GTP-binding elongation factor signature 462 473 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 PRINTS GTP-binding elongation factor signature 410 418 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 PRINTS GTP-binding elongation factor signature 446 456 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 PRINTS GTP-binding elongation factor signature 366 379 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 PRINTS GTP-binding elongation factor signature 498 507 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 SUPERFAMILY Translation proteins 687 821 IPR009000 -
Cma20g00268 1188 Gene3D - 348 582 IPR027417 -
Cma20g00268 1188 CDD EF2_II 720 815 - -
Cma20g00268 1188 Pfam Elongation factor G, domain IV 956 1067 IPR005517 GO:0005525
Cma20g00268 1188 Pfam Elongation factor G C-terminus 1069 1156 IPR000640 -
Cma20g00268 1188 Pfam Elongation Factor G, domain III 832 894 IPR041095 -
Cma20g00268 1188 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 346 1187 - -
Cma20g00268 1188 CDD eEF2_snRNP_like_C 1072 1150 - -
Cma20g00268 1188 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 362 689 IPR000795 GO:0003924|GO:0005525
Cma20g00268 1188 PANTHER - 346 1187 - -
Cma20g00268 1188 Gene3D - 1068 1188 - -
Cma20g00268 1188 TIGRFAM small_GTP: small GTP-binding protein domain 365 521 IPR005225 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00152 Cma-Chr16:667102 Cma20g00268 Cma-Chr20:1300103 6.46E-160 dispersed
Cma18g01217 Cma-Chr18:9609567 Cma20g00268 Cma-Chr20:1300103 9.71E-157 dispersed
Cma20g00248 Cma-Chr20:1215379 Cma20g00268 Cma-Chr20:1300103 0 dispersed
Cma20g00251 Cma-Chr20:1228996 Cma20g00268 Cma-Chr20:1300103 0 dispersed
Cma11g00802 Cma-Chr11:3917130 Cma20g00268 Cma-Chr20:1300103 9.29E-132 transposed
Cma02g00029 Cma-Chr2:155137 Cma20g00268 Cma-Chr20:1300103 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00268 K03234 - csv:101208886 1657.5